CF838469

Overview
NameCF838469
Unique NameCF838469
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838469 vs. ExPASy Swiss-Prot
Match: TMM18_RAT (Transmembrane protein 18 OS=Rattus norvegicus GN=Tmem18 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 2
Query:  251 DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDPHGVFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 607
            DW EPWL+GL+AFH + L++   S +    Q+  FL  +  VY AE +N V   NW+ FA   YFD  G+F+S ++S PLLF A++I++  +    +++   K  + R + R  R KE+
Sbjct:   22 DWTEPWLLGLLAFHLLCLLLTCFSAQRYKLQIGHFLCLVVLVYCAEYINEVAAMNWRLFAKYQYFDSRGMFISLVFSAPLLFNAMVIVIMWVRKTLTVMSDLKNLQERRKERKRRRKEE 140          
BLAST of CF838469 vs. ExPASy Swiss-Prot
Match: TMM18_HUMAN (Transmembrane protein 18 OS=Homo sapiens GN=TMEM18 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.983e-17
Identity = 44/119 (36.97%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  251 DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDPHGVFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 607
            DW EPWLMGL  FH + +++   S ++   Q+  FL  +  VY AE +N     NW+ F+   YFD  G+F+S ++S PLL  A+II+V  ++   +++   K A+ R + +  R KED
Sbjct:   22 DWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHFLCLVILVYCAEYINEAAAMNWRLFSKYQYFDSRGMFISIVFSAPLLVNAMIIVVMWVWKTLNVMTDLKNAQERRKEKKRRRKED 140          
BLAST of CF838469 vs. ExPASy Swiss-Prot
Match: TMM18_MOUSE (Transmembrane protein 18 OS=Mus musculus GN=Tmem18 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.590e-17
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  251 DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDPHGVFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKED 607
            DW EPWL+GL+AFH + L++   S +    Q+  FL  +  VY AE +N V   NW+ F+   YFD  G+F+S ++S PLLF A++I++  +    +++   K  +   + R  R KE+
Sbjct:   22 DWTEPWLLGLLAFHLLCLLLTCFSSQRYKLQIGHFLCLVVLVYSAEYINEVAAVNWRLFSKYQYFDSRGMFISLVFSAPLLFNAMLIVIMWVRKTLTVMTDLKTLQEERKERRRRRKEE 140          
BLAST of CF838469 vs. ExPASy Swiss-Prot
Match: TMM18_DANRE (Transmembrane protein 18 OS=Danio rerio GN=tmem18 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.590e-17
Identity = 45/123 (36.59%), Postives = 68/123 (55.28%), Query Frame = 2
Query:  236 FFHAIDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDPHGVFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNKE 604
            F  ++DW EPWLM L+AFH       + S K    Q+  FLL +A VY AE LN +   NW+ F+   YFD  G+F+S ++S PLL   +II+   ++   S +   K  +L+ +A    +K+
Sbjct:   28 FLQSVDWSEPWLMALLAFHVFCFAFTLLSCKYYRIQICHFLLMVAMVYSAEYLNELAAMNWRSFSKFQYFDSKGMFISLVYSVPLLLNTVIIVAVWVWRTFSTMTELKILQLKRKAARENHKK 150          
BLAST of CF838469 vs. ExPASy Swiss-Prot
Match: TMM18_XENTR (Transmembrane protein 18 OS=Xenopus tropicalis GN=tmem18 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.193e-16
Identity = 46/121 (38.02%), Postives = 70/121 (57.85%), Query Frame = 2
Query:  248 IDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDPHGVFLSALWSGPLLFIAIIILVNTLF-SLCSLIVRWKKAELRHRARISRNKED 607
            IDWKEPWL+GL  FH + L+V   S K+   Q+  FLL +  V  AE +N     +W+ ++ Q YFD  G+F+S  +S PLL   III+V+ ++ +LC +       + R  +R  R K++
Sbjct:   16 IDWKEPWLIGLAVFHILCLIVTYVSFKSYPLQICHFLLMVVLVSCAEYINEFAAMHWRSYSKQQYFDSSGMFISLAFSAPLLCNTIIIVVHWVYKTLCVMTELKTLQQKRKESREKRKKKE 136          
BLAST of CF838469 vs. ExPASy Swiss-Prot
Match: TMM18_CHICK (Transmembrane protein 18 OS=Gallus gallus GN=TMEM18 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.379e-16
Identity = 41/117 (35.04%), Postives = 66/117 (56.41%), Query Frame = 2
Query:  251 DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDPHGVFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARISRNK 601
            DW EPWL+GL  FH +  ++   S ++   Q+  FL  +  VY AE +N +   NW+ F+   YFD  G+F+S ++S PLL   III+VN ++   +++   K  + R +A   + K
Sbjct:   26 DWAEPWLLGLAGFHVLCFLLTCFSFQHYRVQIGHFLCMVCLVYCAEYINELAAMNWRLFSKYQYFDSRGMFISLVFSAPLLVNTIIIVVNWVYRTLNVMTELKTLQQRIKAEKDKKK 142          
BLAST of CF838469 vs. ExPASy Swiss-Prot
Match: TMM18_XENLA (Transmembrane protein 18 OS=Xenopus laevis GN=tmem18 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.088e-15
Identity = 45/121 (37.19%), Postives = 69/121 (57.02%), Query Frame = 2
Query:  248 IDWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDPHGVFLSALWSGPLLFIAIIILVNTLF-SLCSLIVRWKKAELRHRARISRNKED 607
            IDW EPWL+GL AFH +  +V   S K+   Q+  FLL +  V  AE +N     +W+ ++ Q YFD  G+F+S  +S PLL   III+V+ ++ +LC +       + R  +R  R K++
Sbjct:   16 IDWTEPWLIGLAAFHILCFIVTYISFKSYPLQICHFLLMVVLVSCAEYINEFAAMHWRAYSKQQYFDSSGMFISLAFSAPLLCNTIIIVVHWVYKTLCVMTELKTLQQKRKESREKRKKKE 136          
BLAST of CF838469 vs. ExPASy Swiss-Prot
Match: TMM18_BOVIN (Transmembrane protein 18 OS=Bos taurus GN=TMEM18 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.421e-15
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  251 DWKEPWLMGLMAFHFVLLVVAISSRKNLNFQMYLFLLALAGVYFAENLNRVLGSNWKRFATQNYFDPHGVFLSALWSGPLLFIAIIILVNTLFSLCSLIVRWKKAELRHRARI-SRNKED 607
            DW EPWL+GL  FH + L++   S +    Q+  FL  +  VY AE +N V   NW+ F+   YFD  G+F+S ++S PLL  A++I+V  L+   +L+V      LR + R  +R KE+
Sbjct:   22 DWTEPWLVGLAGFHVLCLLLTCFSSQRYRLQVGHFLCLVTLVYCAEYINEVAAMNWRLFSKHQYFDSRGMFISLVFSAPLLLNALVIVV--LWVRKTLVVMTDLRSLREQRRARARPKEE 139          
The following BLAST results are available for this feature:
BLAST of CF838469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TMM18_RAT2.343e-1837.82Transmembrane protein 18 OS=Rattus norvegicus GN=T... [more]
TMM18_HUMAN1.983e-1736.97Transmembrane protein 18 OS=Homo sapiens GN=TMEM18... [more]
TMM18_MOUSE2.590e-1736.13Transmembrane protein 18 OS=Mus musculus GN=Tmem18... [more]
TMM18_DANRE2.590e-1736.59Transmembrane protein 18 OS=Danio rerio GN=tmem18 ... [more]
TMM18_XENTR2.193e-1638.02Transmembrane protein 18 OS=Xenopus tropicalis GN=... [more]
TMM18_CHICK6.379e-1635.04Transmembrane protein 18 OS=Gallus gallus GN=TMEM1... [more]
TMM18_XENLA1.088e-1537.19Transmembrane protein 18 OS=Xenopus laevis GN=tmem... [more]
TMM18_BOVIN1.421e-1538.33Transmembrane protein 18 OS=Bos taurus GN=TMEM18 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06K19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838469 ID=CF838469; Name=CF838469; organism=Citrus sinensis; type=EST; length=801bp
CTAAAAAGAAGACAGTGGAGAAAGGGAGAAAGAGGGGACTGGTTCGCCAA
GGCAGCAATCGACTGCAAACAAACCACGCGCTCAAGATCTGAAATTACTA
CATTCAAACCTCTAAACTATGGAGGAGCTTAGATCGGCTGCGGAGGCCCA
CATGGATCAAGTGGCGGATCTGGTTCAGAAACTGTCCGCGGAGCTCCGCA
CCGGACTCCGACCCGCTTTCGATAACTTCATCGGTTTCTTTCACGCCATC
GACTGGAAGGAGCCTTGGTTAATGGGTTTAATGGCATTTCATTTTGTGTT
GCTTGTAGTAGCCATATCCTCGAGAAAAAATCTCAACTTCCAAATGTATT
TGTTCCTTCTTGCTTTGGCTGGTGTGTATTTTGCTGAGAATCTCAATCGG
GTACTTGGTAGTAACTGGAAGCGCTTTGCAACTCAAAACTATTTTGATCC
GCATGGGGTTTTCCTGTCAGCTCTCTGGTCTGGGCCACTTCTTTTCATTG
CAATCATTATATTGGTGAACACCCTCTTTTCTCTATGTTCCTTGATCGTT
AGGTGGAAGAAAGCTGAGCTAAGACACCGTGCTAGGATTTCACGTAACAA
GGAAGATTAGTAATCCTTTCCTTTGCAGCATTGTTGAGCTGGGCACTTTT
CATGTTTGTGAGCCATATTCATTATGGGATCTCGTGTGGTTTTTTTTTTT
TTTGGTCCTTTTATATTTTTGTTATGATAAAAATTTCGGAAAATGTATCT
TGGCAATACAATTAGATGGTGGATAGGTTTATAGTTTTATTTCCTTCAAT
T
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