CF838475

Overview
NameCF838475
Unique NameCF838475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length332
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8892 contig Csv1_Contig8892:178..500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.181e-18
Identity = 39/44 (88.64%), Postives = 44/44 (100.00%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 149
            F+ITTVFSHSQTVVVCGNCQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct:   43 FNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.149e-17
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 149
            F+ITTVFSHSQTVVVC  CQ+VLCQPTGG+ARLTEGCSFRRKGD
Sbjct:   43 FNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.041e-16
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            F+ITTVFSHSQTVVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Sbjct:   43 FNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_SCHPO (40S ribosomal protein S27 OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.257e-15
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            F+ITTVFSH+QTVV+CG+C SVLCQPTGG+ARL EGCSFRRK
Sbjct:   41 FNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.257e-15
Identity = 34/42 (80.95%), Postives = 41/42 (97.62%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            F+ITTVFSHSQTVV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Sbjct:   43 FNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_NEUCR (40S ribosomal protein S27 OS=Neurospora crassa GN=rps-27 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.297e-15
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            F ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   41 FTITTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFRRK 82          

HSP 2 Score: 24.2534 bits (51), Expect = 8.297e-15
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1
Query:    1 VKCPGCFT 24
            VKCPGCFT
Sbjct:   35 VKCPGCFT 42          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.495e-14
Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 149
            F+ITTVFSHSQTVV+CG+C SVLC PTG   RLTEGCSFRRK D
Sbjct:   43 FNITTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRKSD 86          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_XENLA (40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            + ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_RAT (40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            + ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_PONAB (40S ribosomal protein S27 OS=Pongo abelii GN=RPS27 PE=3 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14
Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3
Query:   18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143
            + ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:   41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
The following BLAST results are available for this feature:
BLAST of CF838475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS272_ARATH2.181e-1888.6440S ribosomal protein S27-2 OS=Arabidopsis thalian... [more]
RS27_HORVU3.149e-1788.6440S ribosomal protein S27 OS=Hordeum vulgare GN=RP... [more]
RS273_ARATH2.041e-1688.1040S ribosomal protein S27-3 OS=Arabidopsis thalian... [more]
RS27_SCHPO2.257e-1583.3340S ribosomal protein S27 OS=Schizosaccharomyces p... [more]
RS271_ARATH2.257e-1580.9540S ribosomal protein S27-1 OS=Arabidopsis thalian... [more]
RS27_NEUCR8.297e-1580.9540S ribosomal protein S27 OS=Neurospora crassa GN=... [more]
RS27_CHLRE2.495e-1479.5540S ribosomal protein S27 OS=Chlamydomonas reinhar... [more]
RS27_XENLA7.260e-1478.5740S ribosomal protein S27 OS=Xenopus laevis GN=rps... [more]
RS27_RAT7.260e-1478.5740S ribosomal protein S27 OS=Rattus norvegicus GN=... [more]
RS27_PONAB7.260e-1478.5740S ribosomal protein S27 OS=Pongo abelii GN=RPS27... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838475 ID=CF838475; Name=CF838475; organism=Citrus sinensis; type=EST; length=332bp
GTGAAATGTCCCGGTTGTTTCACATAACAACTGTTTTCAGCCACTCTCAA
ACTGTTGTGGTTTGTGGCAACTGCCAATCCGTTCTGTGCCAGCCCACTGG
TGGTCGTGCCAGACTCACTGAGGGATGCTCGTTCAGAAGAAAGGGTGACT
AAGTGTTGCCTAAATGATAAATCTTTTCATTTTGGTTATGATGTATTGAG
TTTGGTAGAAGGTTTAAGGTCAGACAGTGTTTTAACCTTTTGTTTCAAAT
TTAATTGACTCAATGTAGTGGATGATCTTATGTTTGAAAGAAAATATTTT
TAAGTGAATGTTTTTCAAAAAAAAAAAAAAAA
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