CF838475
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 2.181e-18 Identity = 39/44 (88.64%), Postives = 44/44 (100.00%), Query Frame = 3 Query: 18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 149 F+ITTVFSHSQTVVVCGNCQ++LCQPTGG+A+LTEGCSFRRKGD Sbjct: 43 FNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 3.149e-17 Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 3 Query: 18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 149 F+ITTVFSHSQTVVVC CQ+VLCQPTGG+ARLTEGCSFRRKGD Sbjct: 43 FNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 2.041e-16 Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = 3 Query: 18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143 F+ITTVFSHSQTVVVCGNCQ+VLCQPTGG+ARL EGCSFR+K Sbjct: 43 FNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_SCHPO (40S ribosomal protein S27 OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.257e-15 Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 3 Query: 18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143 F+ITTVFSH+QTVV+CG+C SVLCQPTGG+ARL EGCSFRRK Sbjct: 41 FNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.257e-15 Identity = 34/42 (80.95%), Postives = 41/42 (97.62%), Query Frame = 3 Query: 18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143 F+ITTVFSHSQTVV+CGNCQ++LC PTGG+A+LTEGCSFR+K Sbjct: 43 FNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_NEUCR (40S ribosomal protein S27 OS=Neurospora crassa GN=rps-27 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.297e-15 Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3 Query: 18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143 F ITTVFSH+QTVV+C C +VLCQPTGG+ARLTEGCSFRRK Sbjct: 41 FTITTVFSHAQTVVICQGCTTVLCQPTGGKARLTEGCSFRRK 82 HSP 2 Score: 24.2534 bits (51), Expect = 8.297e-15 Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = 1 Query: 1 VKCPGCFT 24 VKCPGCFT Sbjct: 35 VKCPGCFT 42
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.495e-14 Identity = 35/44 (79.55%), Postives = 38/44 (86.36%), Query Frame = 3 Query: 18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 149 F+ITTVFSHSQTVV+CG+C SVLC PTG RLTEGCSFRRK D Sbjct: 43 FNITTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRKSD 86
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_XENLA (40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14 Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3 Query: 18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143 + ITTVFSH+QTVV+C C +VLCQPTGG+ARLTEGCSFRRK Sbjct: 41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_RAT (40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3) HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14 Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3 Query: 18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143 + ITTVFSH+QTVV+C C +VLCQPTGG+ARLTEGCSFRRK Sbjct: 41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82
BLAST of CF838475 vs. ExPASy Swiss-Prot
Match: RS27_PONAB (40S ribosomal protein S27 OS=Pongo abelii GN=RPS27 PE=3 SV=3) HSP 1 Score: 75.8702 bits (185), Expect = 7.260e-14 Identity = 33/42 (78.57%), Postives = 38/42 (90.48%), Query Frame = 3 Query: 18 FHITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 143 + ITTVFSH+QTVV+C C +VLCQPTGG+ARLTEGCSFRRK Sbjct: 41 YKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82 The following BLAST results are available for this feature:
BLAST of CF838475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838475 ID=CF838475; Name=CF838475; organism=Citrus sinensis; type=EST; length=332bpback to top |