CF838482

Overview
NameCF838482
Unique NameCF838482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF838482 vs. ExPASy Swiss-Prot
Match: APX4_ARATH (Probable L-ascorbate peroxidase 4, chloroplastic OS=Arabidopsis thaliana GN=APX4 PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 2.128e-55
Identity = 104/131 (79.39%), Postives = 115/131 (87.79%), Query Frame = 2 
Query:    2 SNGPFGLFEKQFGRTDAPEPDPEGRVPQWEKATVQEMKDKFSAIGFGPRQLSVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYKAYTYPAQKIELGKLKL 394
            S G +GLF++ FGR+DA E DPEGRVPQW KATVQEMKDKF A+G GPRQL+VMSAFLGPDQAATE LLATD  V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS LGQQIN++AYTYP ++I L KLKL
Sbjct:  219 SAGQWGLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGLGPRQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTYPVERINLSKLKL 349
[Close]
BLAST of CF838482 vs. ExPASy Swiss-Prot
Match: APX4_SOLLC (Putative L-ascorbate peroxidase, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.780e-55
Identity = 102/131 (77.86%), Postives = 119/131 (90.84%), Query Frame = 2 
Query:    2 SNGPFGLFEKQFGRTDAPEPDPEGRVPQWEKATVQEMKDKFSAIGFGPRQLSVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYKAYTYPAQKIELGKLKL 394
            SNG +G F++ FGR+DA EPDPEGRVPQW+KA+VQEMKDKF A+G GPRQL+VMS+FLGPDQAATEALLA+D +V PW+QKYQRSRETVS+TDYEVDLITT TKLSSLGQ INY+AYTYP +KI++ KLKL
Sbjct:  215 SNGQWGQFDRIFGRSDAQEPDPEGRVPQWDKASVQEMKDKFKAVGLGPRQLAVMSSFLGPDQAATEALLASDPEVLPWIQKYQRSRETVSRTDYEVDLITTVTKLSSLGQVINYEAYTYPPRKIDVTKLKL 345
The following BLAST results are available for this feature:
BLAST of CF838482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APX4_ARATH2.128e-5579.39Probable L-ascorbate peroxidase 4, chloroplastic O... [more]
APX4_SOLLC2.780e-5577.86Putative L-ascorbate peroxidase, chloroplastic OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06L11_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838482 ID=CF838482; Name=CF838482; organism=Citrus sinensis; type=EST; length=562bp
CTCAAATGGTCCCTTTGGCCTGTTTGAAAAGCAATTTGGAAGGACAGATG
CTCCGGAGCCAGATCCAGAGGGAAGGGTTCCCCAGTGGGAGAAAGCTACT
GTCCAGGAAATGAAAGATAAATTCTCAGCAATTGGCTTTGGTCCCCGCCA
GCTATCTGTTATGTCTGCGTTCTTGGGTCCTGATCAGGCAGCAACAGAAG
CCTTATTGGCCACCGATAAAGATGTTTCTCCTTGGGTTCAGAAATACCAA
CGTAGCAGAGAAACAGTGTCTCAGACTGATTATGAGGTCGATCTGATAAC
TACATTCACGAAATTAAGTAGCCTGGGCCAACAAATCAATTACAAGGCTT
ACACATATCCTGCTCAAAAGATTGAATTGGGCAAACTCAAATTGTACACA
GGAAATGGACTGTGTTCCGAGAGCGGAAGAGCCAATGATTCCGCCAATAA
CTTTTTTGTAAAGCAGAGCTATTCCTCTACAATTTGGAGATTTATGTAGG
GAATTGATGCCGCAGGTTCTACATATCAATGTAAGAGTGCCTACATAAAA
AAAAAAAAAAAA
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