CF838483

Overview
NameCF838483
Unique NameCF838483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838483_ssr149 microsatellite CF838483_ssr149:149..158. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2151 contig Csv1_Contig2151:25..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838483 vs. ExPASy Swiss-Prot
Match: BZR2_ARATH (Protein BRASSINAZOLE-RESISTANT 2 OS=Arabidopsis thaliana GN=BZR2 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.878e-52
Identity = 125/241 (51.87%), Postives = 141/241 (58.51%), Query Frame = 3
Query:   72 MTSDGATSTSAA--------RRKPTWXXXXXXXXXXXXXXAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGTRPPPIDIASTSARVTXXXXXXXXXXXXXXXXXXXXXXXXXTR---------GDANNPSSLLPFLRN-AIPSSLPPLRISNSA--XXXXXXXXXXXXXXXXNWESM--------AKESMSALNYPFYAISAPASPI-HRQLYAPAATIHECD 707
            MTSDGATSTSAA        RRKP+W              A+AAKIYTGLRAQGNYNLPKHCDNNEVLKALC+EAGWVVEEDGTTYRKG +P P D+A +S+R T                         +          GD +N S++ PFLRN  IPSSLPPLRISNSA                   WES         AK+SM++LNYPFYA+SAPASP  HRQ +AP ATI ECD
Sbjct:    1 MTSDGATSTSAAAAAAAMATRRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEEDGTTYRKGHKPLPGDMAGSSSRATPYSSHNQSPLSSTFDSPILSYQVSPSSSSFPSPSRVGDPHNISTIFPFLRNGGIPSSLPPLRISNSAPVTPPVSSPTSRNPKPLPTWESFTKQSMSMAAKQSMTSLNYPFYAVSAPASPTHHRQFHAP-ATIPECD 240          
BLAST of CF838483 vs. ExPASy Swiss-Prot
Match: BZR1_ARATH (Protein BRASSINAZOLE-RESISTANT 1 OS=Arabidopsis thaliana GN=BZR1 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.499e-51
Identity = 122/241 (50.62%), Postives = 137/241 (56.85%), Query Frame = 3
Query:   72 MTSDGATSTSAA---------RRKPTWXXXXXXXXXXXXXXAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGTRPPPIDIASTSARVT--------XXXXXXXXXXXXXXXXXXXXXXXXXTRGDANN--PSSLLPFLRN-AIPSSLPPLRISNS--AXXXXXXXXXXXXXXXXNWES-------MAKESMSALNYPFYAISAPASPIHRQLYAPAATIHECD 707
            MTSDGATSTSAA         RRKP+W              A+AAKIYTGLRAQG+YNLPKHCDNNEVLKALC EAGWVVEEDGTTYRKG +P P +IA TS+RVT                                 +RG+ NN   S+  PFLRN  IPSSLP LRISNS                   NWES       +AK+SM++ NYPFYA+SAPASP HR  +   ATI ECD
Sbjct:    1 MTSDGATSTSAAAAAAAAAAARRKPSWRERENNRRRERRRRAVAAKIYTGLRAQGDYNLPKHCDNNEVLKALCVEAGWVVEEDGTTYRKGCKPLPGEIAGTSSRVTPYSSQNQSPLSSAFQSPIPSYQVSPSSSSFPSPSRGEPNNNMSSTFFPFLRNGGIPSSLPSLRISNSCPVTPPVSSPTSKNPKPLPNWESIAKQSMAIAKQSMASFNYPFYAVSAPASPTHRHQFHTPATIPECD 241          
BLAST of CF838483 vs. ExPASy Swiss-Prot
Match: BEH2_ARATH (BES1/BZR1 homolog protein 2 OS=Arabidopsis thaliana GN=BEH2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.316e-35
Identity = 96/224 (42.86%), Postives = 114/224 (50.89%), Query Frame = 3
Query:   84 GATSTSAARRKPTWXXXXXXXXXXXXXXAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGTRPPPIDIAST--------SARVTXXXXXXXXXXXXXXXXXXXXXXXXXTRGDANNPSS--LLPFLRN---AIPSSLPPLRISNSAXXXXXXXXXXXXXXXXNWESMAKE---SMSALNYPFYAISAPASPIHRQLYAPAATIHECD 707
            G    S++ R PTW              AI AKIY+GLRAQGNY LPKHCDNNEVLKALC EAGW+VE+DGTTYRKG +PP  DI+ T        S + +                         +R D  NPSS  LLPFL N   +IP++LPPLRISNSA                   S       S+  L +P +AISAP+SP  R  +    TI ECD
Sbjct:    7 GGGGGSSSGRTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGFKPPASDISGTPTNFSTNSSIQPSPQSSAFPSPAPSYHGSPVSSSFPSPSRYD-GNPSSYLLLPFLHNIASSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKLTSEQLPNGGSLHVLRHPLFAISAPSSPTRRAGHQTPPTIPECD 229          
BLAST of CF838483 vs. ExPASy Swiss-Prot
Match: BEH1_ARATH (BES1/BZR1 homolog protein 1 OS=Arabidopsis thaliana GN=BEH1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.361e-32
Identity = 89/215 (41.40%), Postives = 111/215 (51.63%), Query Frame = 3
Query:   72 MTSDGATSTSAARRKPTWXXXXXXXXXXXXXXAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGTRPPPIDIASTSARVTXXXXXXXXXXXXXXXXXXXXXXXXXTRGDANNPSS-LLPFLRN-AIPSSLPPLRISNSA-XXXXXXXXXXXXXXXXNWESMAKESMSALNYPFYAISAPASPIHRQLYAPAATIHECD 707
            MT+ G  ST+A  R PTW              AIAAKI+TGLR+QGNY LPKHCDNNEVLKALC EAGW+V EDGTTYRKG+RP    +  +S +++                         TR D N  S+ L+P+L+N A   +L PLRISNSA                  W+S         N+P   +SAP+SP  R  +    +I ECD
Sbjct:    1 MTASGGGSTAATGRMPTWKERENNKKRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWIVHEDGTTYRKGSRPTETTVPCSSIQLSPQSSAFQSPIPSYQASPSSSSYPSPTRFDPNQSSTYLIPYLQNLASSGNLAPLRISNSAPVTPPISSPRRSNPRLPRWQSS--------NFP---VSAPSSPTRRLHH--YTSIPECD 202          
BLAST of CF838483 vs. ExPASy Swiss-Prot
Match: BEH3_ARATH (BES1/BZR1 homolog protein 3 OS=Arabidopsis thaliana GN=BEH3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 63/143 (44.06%), Postives = 74/143 (51.75%), Query Frame = 3
Query:   99 SAARRKPTWXXXXXXXXXXXXXXAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGTRP-PPIDI--ASTSARVTXXXXXXXXXXXXXXXXXXXXXXXXXTRGDANNPSSLLPFLRNA---IPSSLP 509
            ++  R PTW              AIAAKI+ GLR  GN+ LPKHCDNNEVLKALC EAGW VE+DGTTYRKG +P   +D+   STSA                              GDAN   SL+P+L+N     PS LP
Sbjct:    2 TSGTRTPTWKERENNKRRERRRRAIAAKIFAGLRIHGNFKLPKHCDNNEVLKALCNEAGWTVEDDGTTYRKGCKPMDRMDLMNGSTSASPCSSYQHSPRASYNPSPSSSSFPSPTNPFGDAN---SLIPWLKNLSSNSPSKLP 141          
BLAST of CF838483 vs. ExPASy Swiss-Prot
Match: BEH4_ARATH (BES1/BZR1 homolog protein 4 OS=Arabidopsis thaliana GN=BEH4 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 47/76 (61.84%), Postives = 51/76 (67.11%), Query Frame = 3
Query:   99 SAARRKPTWXXXXXXXXXXXXXXAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWVVEEDGTTYRKGTRPP 326
            ++  R PTW              AIAAKI+TGLR  GNY LPKHCDNNEVLKALC EAGW+VE DGTTYRKG   P
Sbjct:    2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEPDGTTYRKGCSRP 77          
The following BLAST results are available for this feature:
BLAST of CF838483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BZR2_ARATH5.878e-5251.87Protein BRASSINAZOLE-RESISTANT 2 OS=Arabidopsis th... [more]
BZR1_ARATH6.499e-5150.62Protein BRASSINAZOLE-RESISTANT 1 OS=Arabidopsis th... [more]
BEH2_ARATH1.316e-3542.86BES1/BZR1 homolog protein 2 OS=Arabidopsis thalian... [more]
BEH1_ARATH1.361e-3241.40BES1/BZR1 homolog protein 1 OS=Arabidopsis thalian... [more]
BEH3_ARATH3.146e-2144.06BES1/BZR1 homolog protein 3 OS=Arabidopsis thalian... [more]
BEH4_ARATH1.195e-2061.84BES1/BZR1 homolog protein 4 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06L12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838483 ID=CF838483; Name=CF838483; organism=Citrus sinensis; type=EST; length=708bp
CGAAGGGAAAGCCTTTTCCTCGTGGCCATTTTAGCCTTTTAGGTCTAGAG
AGACGCTGGCTTCGTCGGAAAATGACGTCAGACGGTGCCACATCGACGTC
GGCAGCTCGGAGGAAGCCGACGTGGAGGGAGAGGGAGAACAATAGGAGGA
GAGAGAGAAGGAGAAGAGCTATAGCCGCTAAGATTTACACTGGGTTGAGG
GCTCAGGGAAACTATAATTTGCCCAAGCACTGTGATAATAATGAAGTTTT
GAAAGCTCTATGTGCAGAAGCTGGCTGGGTTGTTGAGGAAGACGGCACCA
CTTATCGCAAAGGAACGAGGCCTCCTCCTATTGATATAGCAAGTACTTCA
GCCAGAGTTACCCCTTACTCTTCCCAGAATCCAAGTCCTTTATCTTCATC
CTTTCCGAGCCCAGTTCCATCATATCCGACTAGTCCTACTCGTGGTGATG
CCAACAACCCATCTAGCCTCCTCCCGTTCCTCCGAAATGCAATCCCTTCA
TCACTTCCTCCTCTTCGGATCTCAAACAGTGCCCCAGTGACTCCACCCTT
GTCATCCCCTACAAAAAGTAAACCAATTCCCAATTGGGAGTCTATGGCCA
AAGAATCCATGTCTGCCCTCAATTACCCTTTCTACGCTATTTCTGCCCCA
GCTAGTCCAATTCACCGTCAACTGTATGCTCCAGCAGCTACGATACATGA
ATGCGATG
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