CF838485

Overview
NameCF838485
Unique NameCF838485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1196 contig Csv1_Contig1196:180..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838485 vs. ExPASy Swiss-Prot
Match: VSR4_ARATH (Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 3.060e-91
Identity = 156/184 (84.78%), Postives = 172/184 (93.48%), Query Frame = 2
Query:  182 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKC 733
            +RFVVEKNSL VTSPE IKG+HDSAIGNFGIPQYGGSMAG V YPKEN+K C+EF DF ISFK++PGALP F+LVDRGDCFFALKVWNAQKAGASAVLVAD+++E LITMDTPEED+SSAKYIENITIPSAL+ K FGE LKK++SGG+MVN+NLDWREAVPHPDDRVEYELWTNSNDECGVKC
Sbjct:   24 ARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSAKYIENITIPSALVTKGFGEKLKKAISGGDMVNLNLDWREAVPHPDDRVEYELWTNSNDECGVKC 207          
BLAST of CF838485 vs. ExPASy Swiss-Prot
Match: VSR3_ARATH (Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.060e-91
Identity = 156/184 (84.78%), Postives = 172/184 (93.48%), Query Frame = 2
Query:  182 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKC 733
            +RFVVEKNSL VTSPE IKG+HDSAIGNFGIPQYGGSMAG V YPKEN+K C+EF DF ISFK++PGALP F+LVDRGDCFFALKVWNAQKAGASAVLVAD+++E LITMDTPEED+SSAKYIENITIPSAL+ K FGE LKK++SGG+MVN+NLDWREAVPHPDDRVEYELWTNSNDECGVKC
Sbjct:   24 ARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSAKYIENITIPSALVTKGFGEKLKKAISGGDMVNLNLDWREAVPHPDDRVEYELWTNSNDECGVKC 207          
BLAST of CF838485 vs. ExPASy Swiss-Prot
Match: VSR1_PEA (Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.401e-88
Identity = 157/186 (84.41%), Postives = 168/186 (90.32%), Query Frame = 2
Query:  176 SVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKC 733
            S +RFVVEKNSL VTSPEKIKG HDSAIGNFGIPQYGGSMAG V YPK+N KGC+   DF  SFK++PGALP  +L+DRG CFFALKVWNAQKAGASAVLVADDIEE LITMDTPEED+SSAKYIENITIPSALI KSFGE LK ++SGG+MVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKC
Sbjct:   20 STARFVVEKNSLSVTSPEKIKGKHDSAIGNFGIPQYGGSMAGNVVYPKDNSKGCK---DFDSSFKSRPGALPTILLLDRGSCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDVSSAKYIENITIPSALIGKSFGEKLKDAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKC 202          
BLAST of CF838485 vs. ExPASy Swiss-Prot
Match: VSR1_ARATH (Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 5.244e-75
Identity = 126/189 (66.67%), Postives = 157/189 (83.07%), Query Frame = 2
Query:  167 VHTSVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKC 733
            ++ ++ RFVVEKN+L VTSP+ IKG ++ AIGNFG+PQYGG++ G V YPK N+K C+ + DF ISFK+KPG LP FVL+DRGDC+F LK W AQ+AGA+A+LVAD   E LITMDTPEED S A Y++NITIPSALI K+ G+++K +LSGG+MVN+ LDW E+VPHPD+RVEYELWTNSNDECG KC
Sbjct:   14 LNLAMGRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPHPDERVEYELWTNSNDECGKKC 202          
BLAST of CF838485 vs. ExPASy Swiss-Prot
Match: VSR2_ARATH (Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.079e-70
Identity = 117/183 (63.93%), Postives = 150/183 (81.97%), Query Frame = 2
Query:  185 RFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKC 733
            RFVVEKN+L VTSPE I+G ++ A+GNFG+PQYGGSM+GAV YPK N+K C+ F DF ISF+++   LP FVLVDRGDC+F LK WNAQ+AGA+ +LVAD+  E LITMD PE++ S A Y++NITIPSAL+ +S G  +K +++ G+ V+++LDWREA+PHP+DRV YELWTNSNDECG KC
Sbjct:   24 RFVVEKNNLRVTSPESIRGVYECALGNFGVPQYGGSMSGAVVYPKTNQKACKNFDDFEISFRSRVAGLPTFVLVDRGDCYFTLKAWNAQRAGAATILVADNRPEQLITMDAPEDETSDADYLQNITIPSALVSRSLGSAIKTAIAHGDPVHISLDWREALPHPNDRVAYELWTNSNDECGSKC 206          
BLAST of CF838485 vs. ExPASy Swiss-Prot
Match: VSR7_ARATH (Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 6.440e-57
Identity = 102/184 (55.43%), Postives = 135/184 (73.37%), Query Frame = 2
Query:  182 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKC 733
            +RFVVEK S+ V +PE+++  HD +I NFG+P YGG + G+V YP     GC  FG    +FK K    P  +L+DRG C+FALK W+AQ+AGA+AVLVAD+++E L+TMD+PEE   +  +IE +TIPS LIDKSFG+ L++    G+ + + LDWRE+VPHPD RVEYELWTNSNDECG +C
Sbjct:   26 ARFVVEKESISVLNPEEMRSKHDGSIANFGLPDYGGFLIGSVVYPDSKTDGCSAFGK---TFKPK-FPRPTILLLDRGGCYFALKAWHAQQAGAAAVLVADNVDEPLLTMDSPEESKDADGFIEKLTIPSVLIDKSFGDDLRQGFQKGKNIVIKLDWRESVPHPDKRVEYELWTNSNDECGARC 205          
BLAST of CF838485 vs. ExPASy Swiss-Prot
Match: VSR6_ARATH (Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 8.704e-54
Identity = 97/183 (53.01%), Postives = 133/183 (72.68%), Query Frame = 2
Query:  185 RFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKC 733
            RF+VEK+S+ + +P  ++  HD+AI NFG+P YGG M G+V Y  +   GC  F     +FK K    P  +++DRG+C+FALKVWN Q++G +AVLVAD+++E LITMD+PEE   +  +IE + IPSALID SF  TLK++L  GE V + +DW E++PHPD+RVEYELWTN+NDECG +C
Sbjct:   26 RFIVEKSSVTILNPLAMRSKHDAAIANFGVPNYGGYMIGSVVYAGQGAYGCDSFDK---TFKPK-FPRPTILIIDRGECYFALKVWNGQQSGVAAVLVADNVDEPLITMDSPEESKEADDFIEKLNIPSALIDFSFANTLKQALKKGEEVVLKIDWSESLPHPDERVEYELWTNTNDECGARC 204          
BLAST of CF838485 vs. ExPASy Swiss-Prot
Match: VSR5_ARATH (Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.838e-50
Identity = 96/184 (52.17%), Postives = 132/184 (71.74%), Query Frame = 2
Query:  182 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKC 733
            SRF VEK+SL V +  ++   HD+AI NFG+P+YGG M G+V Y  ++  GC  F     +F  K    P  +L+DRG C FALK+WN Q++GA+AVL+AD+I E LITMDTP+++     +I+ + IPSALI +SFG++LKK+L  GE V + +DW E++P+PD+RVEYELW N+NDECGV C
Sbjct:   26 SRFFVEKSSLTVLNSWEMGAKHDAAIANFGLPKYGGFMIGSVVYAGQDAYGCNSFNK---TFNTK-SPYPKILLIDRGVCNFALKIWNGQQSGAAAVLLADNIVEPLITMDTPQDE--DPDFIDKVKIPSALILRSFGDSLKKALKRGEEVILKMDWSESIPNPDERVEYELWANTNDECGVHC 203          
The following BLAST results are available for this feature:
BLAST of CF838485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VSR4_ARATH3.060e-9184.78Vacuolar-sorting receptor 4 OS=Arabidopsis thalian... [more]
VSR3_ARATH3.060e-9184.78Vacuolar-sorting receptor 3 OS=Arabidopsis thalian... [more]
VSR1_PEA5.401e-8884.41Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP... [more]
VSR1_ARATH5.244e-7566.67Vacuolar-sorting receptor 1 OS=Arabidopsis thalian... [more]
VSR2_ARATH5.079e-7063.93Vacuolar-sorting receptor 2 OS=Arabidopsis thalian... [more]
VSR7_ARATH6.440e-5755.43Vacuolar-sorting receptor 7 OS=Arabidopsis thalian... [more]
VSR6_ARATH8.704e-5453.01Vacuolar-sorting receptor 6 OS=Arabidopsis thalian... [more]
VSR5_ARATH5.838e-5052.17Vacuolar-sorting receptor 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06L14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838485 ID=CF838485; Name=CF838485; organism=Citrus sinensis; type=EST; length=735bp
CCGTTAAAGCTCAAACTGAAACTTACCCACTTACATGTTCTACCCTTTTG
ATCCAAAAATCCCAAATCCCCACCAAATCTTTGTCATTGTTTTTTTGACA
AAAATGGAGTCACACGGCTCAATAACTTTGAAGCTCTTTCTGGGGTTTCT
GATTTTGTCCTTAAATGTTCATACTTCGGTGTCGAGATTTGTCGTCGAGA
AAAACAGCTTGATGGTGACGTCACCGGAGAAGATTAAAGGGTCTCACGAC
AGTGCGATTGGCAACTTTGGGATTCCGCAATATGGGGGAAGCATGGCGGG
AGCTGTGACGTATCCTAAGGAGAATCGAAAGGGCTGCAGGGAATTTGGTG
ACTTCGGGATTTCGTTTAAGGCCAAGCCTGGAGCTTTGCCCAATTTCGTT
TTGGTCGATCGTGGAGATTGCTTCTTTGCCTTGAAGGTCTGGAATGCCCA
AAAGGCTGGTGCTTCTGCAGTGCTTGTTGCAGATGACATTGAGGAAGCAT
TAATAACAATGGACACACCTGAAGAGGATATTTCGTCAGCAAAATACATT
GAAAATATAACTATACCATCTGCACTTATTGATAAAAGTTTTGGTGAAAC
ATTAAAGAAATCACTCAGTGGTGGGGAAATGGTCAATGTGAATCTTGATT
GGAGAGAAGCTGTTCCACACCCTGATGATCGCGTGGAGTATGAGTTATGG
ACCAACAGCAATGACGAATGTGGGGTTAAATGTGA
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