CF838486
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 2.139e-53 Identity = 126/211 (59.72%), Postives = 140/211 (66.35%), Query Frame = 2 Query: 26 GGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPR-KKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 622 GG M+DLDINQ S E GS D+EE GGP R KKLRLSKEQSRLLE KQKE LA +LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FGSLTE+NRRLQREVEELRAM+V PPTV+SPH+ +PLPAS L+MCPRCER+T GP V S+ AA +P P R PSAA Sbjct: 36 GGCNMRDLDINQPASGGEEEEFPM-------GSVEEDEEERGV----GGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAAT---GPPAVRPPPSSAAAAAPSPFHP----RRPSAA 228
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 2.139e-53 Identity = 126/211 (59.72%), Postives = 140/211 (66.35%), Query Frame = 2 Query: 26 GGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPR-KKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 622 GG M+DLDINQ S E GS D+EE GGP R KKLRLSKEQSRLLE KQKE LA +LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FGSLTE+NRRLQREVEELRAM+V PPTV+SPH+ +PLPAS L+MCPRCER+T GP V S+ AA +P P R PSAA Sbjct: 36 GGCNMRDLDINQPASGGEEEEFPM-------GSVEEDEEERGV----GGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAAT---GPPAVRPPPSSAAAAAPSPFHP----RRPSAA 228
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 3.423e-43 Identity = 102/183 (55.74%), Postives = 116/183 (63.39%), Query Frame = 2 Query: 11 PLQQAGGSAMKD---LDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTA 517 PL G +D LD+N++PS + D+EE + PPRKKLRL++EQSRLLE KQKE LA L L+PRQ+EVWFQNRRARSKLKQTEMECEYLKRWFGSLTE+N RL REVEELRAMKVGP TV S AS+L+MCPRCERVT A Sbjct: 97 PLSDEGSGGGRDQLRLDMNRLPSSED------------------GDDEEFSHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNS--------ASSLTMCPRCERVTPAA 253
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.806e-37 Identity = 97/179 (54.19%), Postives = 109/179 (60.89%), Query Frame = 2 Query: 38 MKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKV 541 M+D DINQ P + + G+ +E++S GG RKKLRL+KEQS LLE KQK++LAT LKL RQVEVWFQNRRARSKLK TEMECEYLKRWFGSL EQNRRLQ EVEELRA+K P S L+MCPRCERV T AVD V Sbjct: 31 MRDFDINQTPKTEEDREWMI-------GATPHVNEDDSN---SGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALK-------------PSSTSALTMCPRCERV-TDAVDNDSNAV 185
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.430e-35 Identity = 86/164 (52.44%), Postives = 104/164 (63.41%), Query Frame = 2 Query: 164 DGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 622 DGG RKKLRLSKEQS LE KQK LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR +LTE+NRRLQ+E+ ELRA+K P + LPA+TLSMCP CERV + + + T+S+ +P G A S +AA Sbjct: 171 DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMH------LPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAATSSSAAAA 328
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.430e-35 Identity = 86/164 (52.44%), Postives = 104/164 (63.41%), Query Frame = 2 Query: 164 DGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 622 DGG RKKLRLSKEQS LE KQK LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR +LTE+NRRLQ+E+ ELRA+K P + LPA+TLSMCP CERV + + + T+S+ +P G A S +AA Sbjct: 84 DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMH------LPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAATSSSSAAA 241
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3) HSP 1 Score: 145.591 bits (366), Expect = 2.904e-34 Identity = 82/157 (52.23%), Postives = 100/157 (63.69%), Query Frame = 2 Query: 164 DGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQ 601 + G RKKLRLSK+QS LE KQK LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR SLTE+NRRLQ+EV+ELR +K P + LPA+TL+MCP CERV T+A + + ++L P PA Q Sbjct: 184 ENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQ------LPATTLTMCPSCERVATSAAQPSTSAAHNLCLSTSSLIPVKPRPAKQ 334
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.954e-34 Identity = 85/166 (51.20%), Postives = 111/166 (66.87%), Query Frame = 2 Query: 119 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPL-PASTLSMCPRCERVTTT--------AVDKGPTKVTTASS 556 G G D+E+ C +DG RKKLRLSK+QS +LE +QK LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR +LTE+NRRLQ+EV+ELRA+K ++SPH + P +TL+MCP CERV+ T A D+ + TTA++ Sbjct: 64 GGGGSDEEDGGC-GIDGS--RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALK-----LVSPHLYMNMSPPTTLTMCPSCERVSNTNNNSSAAAAADRRGIRTTTAAA 221
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 6.470e-34 Identity = 85/165 (51.52%), Postives = 110/165 (66.67%), Query Frame = 2 Query: 119 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPL-PASTLSMCPRCERVTTT--------AVDKGPTKVTTAS 553 G G D+E+ C +DG RKKLRLSK+QS +LE +QK LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR +LTE+NRRLQ+EV+ELRA+K ++SPH + P +TL+MCP CERV+ T A D+ + TTA+ Sbjct: 64 GGGGSDEEDGGC-GIDGS--RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALK-----LVSPHLYMNMSPPTTLTMCPSCERVSNTNNNSSAAAAADRRGIRTTTAA 220
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 8.450e-34 Identity = 83/164 (50.61%), Postives = 101/164 (61.59%), Query Frame = 2 Query: 119 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTT---TAVDKGPTKVTTASSTPAA 568 G G + + +G RKKLRLSKEQS LE KQK LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR +LTE+NRRL +E+ ELRA+K P + LPA+TLSMCP CERV + TA P T+ ++ P A Sbjct: 153 GGGGERSSSRASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMH------LPATTLSMCPSCERVASNPATASTSAPAAATSPAAAPTA 310 The following BLAST results are available for this feature:
BLAST of CF838486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838486 ID=CF838486; Name=CF838486; organism=Citrus sinensis; type=EST; length=779bpback to top |