CF838486

Overview
NameCF838486
Unique NameCF838486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1281 contig Csv1_Contig1281:1..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.139e-53
Identity = 126/211 (59.72%), Postives = 140/211 (66.35%), Query Frame = 2
Query:   26 GGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPR-KKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 622
            GG  M+DLDINQ  S   E            GS   D+EE       GGP R KKLRLSKEQSRLLE           KQKE LA +LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FGSLTE+NRRLQREVEELRAM+V PPTV+SPH+ +PLPAS L+MCPRCER+T      GP  V    S+ AA +P    P    R PSAA
Sbjct:   36 GGCNMRDLDINQPASGGEEEEFPM-------GSVEEDEEERGV----GGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAAT---GPPAVRPPPSSAAAAAPSPFHP----RRPSAA 228          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.139e-53
Identity = 126/211 (59.72%), Postives = 140/211 (66.35%), Query Frame = 2
Query:   26 GGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPR-KKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 622
            GG  M+DLDINQ  S   E            GS   D+EE       GGP R KKLRLSKEQSRLLE           KQKE LA +LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FGSLTE+NRRLQREVEELRAM+V PPTV+SPH+ +PLPAS L+MCPRCER+T      GP  V    S+ AA +P    P    R PSAA
Sbjct:   36 GGCNMRDLDINQPASGGEEEEFPM-------GSVEEDEEERGV----GGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAAT---GPPAVRPPPSSAAAAAPSPFHP----RRPSAA 228          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.423e-43
Identity = 102/183 (55.74%), Postives = 116/183 (63.39%), Query Frame = 2
Query:   11 PLQQAGGSAMKD---LDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTA 517
            PL   G    +D   LD+N++PS +                    D+EE   +    PPRKKLRL++EQSRLLE           KQKE LA  L L+PRQ+EVWFQNRRARSKLKQTEMECEYLKRWFGSLTE+N RL REVEELRAMKVGP TV S        AS+L+MCPRCERVT  A
Sbjct:   97 PLSDEGSGGGRDQLRLDMNRLPSSED------------------GDDEEFSHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNS--------ASSLTMCPRCERVTPAA 253          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.806e-37
Identity = 97/179 (54.19%), Postives = 109/179 (60.89%), Query Frame = 2
Query:   38 MKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKV 541
            M+D DINQ P  + +            G+    +E++S     GG  RKKLRL+KEQS LLE           KQK++LAT LKL  RQVEVWFQNRRARSKLK TEMECEYLKRWFGSL EQNRRLQ EVEELRA+K             P   S L+MCPRCERV T AVD     V
Sbjct:   31 MRDFDINQTPKTEEDREWMI-------GATPHVNEDDSN---SGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALK-------------PSSTSALTMCPRCERV-TDAVDNDSNAV 185          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.430e-35
Identity = 86/164 (52.44%), Postives = 104/164 (63.41%), Query Frame = 2
Query:  164 DGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 622
            DGG  RKKLRLSKEQS  LE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR   +LTE+NRRLQ+E+ ELRA+K   P  +       LPA+TLSMCP CERV + +     +   T+S+     +P  G  A  S   +AA
Sbjct:  171 DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMH------LPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAATSSSAAAA 328          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.430e-35
Identity = 86/164 (52.44%), Postives = 104/164 (63.41%), Query Frame = 2
Query:  164 DGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 622
            DGG  RKKLRLSKEQS  LE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR   +LTE+NRRLQ+E+ ELRA+K   P  +       LPA+TLSMCP CERV + +     +   T+S+     +P  G  A  S   +AA
Sbjct:   84 DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMH------LPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAATSSSSAAA 241          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.904e-34
Identity = 82/157 (52.23%), Postives = 100/157 (63.69%), Query Frame = 2
Query:  164 DGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQ 601
            + G  RKKLRLSK+QS  LE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR   SLTE+NRRLQ+EV+ELR +K   P  +       LPA+TL+MCP CERV T+A     +       + ++L P    PA Q
Sbjct:  184 ENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQ------LPATTLTMCPSCERVATSAAQPSTSAAHNLCLSTSSLIPVKPRPAKQ 334          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.954e-34
Identity = 85/166 (51.20%), Postives = 111/166 (66.87%), Query Frame = 2
Query:  119 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPL-PASTLSMCPRCERVTTT--------AVDKGPTKVTTASS 556
            G G  D+E+  C  +DG   RKKLRLSK+QS +LE           +QK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR   +LTE+NRRLQ+EV+ELRA+K     ++SPH    + P +TL+MCP CERV+ T        A D+   + TTA++
Sbjct:   64 GGGGSDEEDGGC-GIDGS--RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALK-----LVSPHLYMNMSPPTTLTMCPSCERVSNTNNNSSAAAAADRRGIRTTTAAA 221          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.470e-34
Identity = 85/165 (51.52%), Postives = 110/165 (66.67%), Query Frame = 2
Query:  119 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPL-PASTLSMCPRCERVTTT--------AVDKGPTKVTTAS 553
            G G  D+E+  C  +DG   RKKLRLSK+QS +LE           +QK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR   +LTE+NRRLQ+EV+ELRA+K     ++SPH    + P +TL+MCP CERV+ T        A D+   + TTA+
Sbjct:   64 GGGGSDEEDGGC-GIDGS--RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALK-----LVSPHLYMNMSPPTTLTMCPSCERVSNTNNNSSAAAAADRRGIRTTTAA 220          
BLAST of CF838486 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.450e-34
Identity = 83/164 (50.61%), Postives = 101/164 (61.59%), Query Frame = 2
Query:  119 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTT---TAVDKGPTKVTTASSTPAA 568
            G G       +  + +G   RKKLRLSKEQS  LE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR   +LTE+NRRL +E+ ELRA+K   P  +       LPA+TLSMCP CERV +   TA    P   T+ ++ P A
Sbjct:  153 GGGGERSSSRASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMH------LPATTLSMCPSCERVASNPATASTSAPAAATSPAAAPTA 310          
The following BLAST results are available for this feature:
BLAST of CF838486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
HOX3_ORYSJ2.139e-5359.72Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX3_ORYSI2.139e-5359.72Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
ATB17_ARATH3.423e-4355.74Homeobox-leucine zipper protein ATHB-17 OS=Arabido... [more]
ATHBX_ARATH2.806e-3754.19Homeobox-leucine zipper protein ATHB-X OS=Arabidop... [more]
HOX11_ORYSJ3.430e-3552.44Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI3.430e-3552.44Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HAT14_ARATH2.904e-3452.23Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
HOX17_ORYSI4.954e-3451.20Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX17_ORYSJ6.470e-3451.52Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX27_ORYSJ8.450e-3450.61Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838486 ID=CF838486; Name=CF838486; organism=Citrus sinensis; type=EST; length=779bp
TCATCATCACCCCCTTCAACAAGCCGGAGGTTCTGCGATGAAGGATTTGG
ACATAAACCAAGTACCATCAGAAGATACTGAATGGAATAATTGGAACACA
GCAACAGCAACAACAACAGGATCAGGAAGCATGGACGATGAAGAAGAGAG
CTGCATCAACGTTGACGGCGGCCCTCCTCGCAAAAAGCTTCGCCTCTCCA
AAGAACAGTCTCGTCTTCTCGAAAAGCAGAAAGAAGAACTGGCTACGCAG
TTGAAGCTGAAGCCACGTCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGC
CAGGAGCAAGCTGAAGCAAACGGAGATGGAATGCGAGTACTTGAAGAGAT
GGTTTGGTTCATTGACTGAACAAAACAGGAGGCTGCAAAGGGAAGTGGAG
GAGCTCAGGGCTATGAAGGTGGGCCCACCCACCGTGATCTCTCCCCACAG
TTGTGAGCCACTCCCGGCATCAACCCTATCAATGTGTCCACGGTGTGAGC
GCGTGACCACCACCGCCGTTGACAAGGGCCCCACCAAGGTCACCACCGCC
TCCTCCACTCCCGCGGCATTGTCTCCTAAAGTCGGGACGCCGGCCCTCCA
GTCACGGTAGCCTTCGGCGGCCTGATGGAAAGTTAAACGTGGCAAAACAT
TAATCAAAAGCAAAAGGAGAAATTAGTTTTAGAGGATGTTCATAGGAAAA
GAAATATGCAAGTGTGCATGCAAGATACCAATGAAGATAAGATACTATCA
TTGATATATATGTGTGGTATCTGATCTGC
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