CF838515

Overview
NameCF838515
Unique NameCF838515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1097 contig Csv1_Contig1097:38..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838515 vs. ExPASy Swiss-Prot
Match: Y2881_DICDI (Uncharacterized protein DDB_G0288155 OS=Dictyostelium discoideum GN=DDB_G0288155 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.033e-48
Identity = 98/236 (41.53%), Postives = 150/236 (63.56%), Query Frame = 1
Query:  100 VGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAENAKSFDEIEFEKVLRKKFARRDEEYDSML 807
            +G  ++ TG  L R GC++QG+Y + E+L+RH  L    D AP V + +F+AP+ASIIGDV +G+ SSIWY  VLRGDVNSI +G  T + D ++VH + +   G   PT IGD V +G  +++H  T+  E+F+G G+TL DG VVE++G + AGSL+     I SGE WGG+PAKF+R++T ++ + + +      NL++ H  + +KS  E+  +  L +K+ +     D +L
Sbjct:   10 LGEVVKNTGLILHRTGCKMQGDYAYVEKLNRHTRLTAFGDNAPIVGQKSFIAPNASIIGDVVIGKESSIWYNAVLRGDVNSIHIGDKTVVSDRTVVHCSSNGPLGP-KPTQIGDKVYIGPGSIVHAATILGESFIGTGSTLCDGSVVEKNGFLEAGSLLTAGKTIKSGEYWGGSPAKFIRQVTKDDESQLEKIIEQNINLSEQHEKQTSKSAKELNND--LLQKYVKNRTRSDHIL 242          
BLAST of CF838515 vs. ExPASy Swiss-Prot
Match: YRDA_SHIFL (Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 73/159 (45.91%), Postives = 104/159 (65.41%), Query Frame = 1
Query:  217 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA-KSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNY 690
            D  P + +   +  S+ +IGDV++     IW   V+RGDV+ + +G+ TNIQD S++HV  KS+ +    P TIG++VTVGH  +LHGCT+ +   VGMG+ LLDG +VE   M+ AGSLV QN R+ SG ++ G+P K +R L+DEE A +  SA NY
Sbjct:   10 DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 168          
BLAST of CF838515 vs. ExPASy Swiss-Prot
Match: YRDA_ECOLI (Protein yrdA OS=Escherichia coli (strain K12) GN=yrdA PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 73/159 (45.91%), Postives = 104/159 (65.41%), Query Frame = 1
Query:  217 DKAPAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVA-KSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNY 690
            D  P + +   +  S+ +IGDV++     IW   V+RGDV+ + +G+ TNIQD S++HV  KS+ +    P TIG++VTVGH  +LHGCT+ +   VGMG+ LLDG +VE   M+ AGSLV QN R+ SG ++ G+P K +R L+DEE A +  SA NY
Sbjct:   10 DLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNY 168          
BLAST of CF838515 vs. ExPASy Swiss-Prot
Match: UMP7_ARATH (Uncharacterized protein At5g63510, mitochondrial OS=Arabidopsis thaliana GN=At5g63510 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.659e-33
Identity = 73/165 (44.24%), Postives = 106/165 (64.24%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE 720
            P V  DA+VAP+  + G V V  GSS+W G VLRGD+N I+VG  +N+Q+  +VH A S+ +G    T I   VTVG  ++L  CT+E E  +G  + L++G +VE   ++ AGS+V    RIPSGE+WGGNPA+F+R LT+EE   I + A   ++L+  + +E
Sbjct:   66 PKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAATIIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVVPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSE 230          
BLAST of CF838515 vs. ExPASy Swiss-Prot
Match: UMP8_ARATH (Uncharacterized protein At3g48680, mitochondrial OS=Arabidopsis thaliana GN=At3g48680 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.038e-32
Identity = 72/165 (43.64%), Postives = 106/165 (64.24%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE 720
            P V  DA+VAP+  + G V V  GSS+W G VLRGD+N I+VG  +N+Q+  +VH A S+ +G    T I   VTVG  ++L  CT+E E  +G  + L++G +VE   ++ AGS++    RIPSGE+WGGNPA+F+R LT+EE   I + A   ++L+  + +E
Sbjct:   70 PKVAVDAYVAPNVVLAGQVTVWDGSSVWNGAVLRGDLNKITVGFCSNVQERCVVHAAWSSPTGLPAQTLIDRYVTVGAYSLLRSCTIEPECIIGQHSILMEGSLVETRSILEAGSVLPPGRRIPSGELWGGNPARFIRTLTNEETLEIPKLAVAINHLSGDYFSE 234          
BLAST of CF838515 vs. ExPASy Swiss-Prot
Match: Y304_METJA (Uncharacterized protein MJ0304 OS=Methanocaldococcus jannaschii GN=MJ0304 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.499e-31
Identity = 67/158 (42.41%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  232 VDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQ 705
            + K+  +A  A I+GDV +G  SS+WY  V+RGDV+ I +G+ +NIQD  +VH +K        PT IGD V++GH AV+HGC +ED   VGM AT+L+G  +  + ++ A +LV QN  IP   +  G P + +R+LT+EEI  I ++A  Y  L++
Sbjct:    2 ISKNVRIAKGAVIVGDVTIGDYSSVWYNAVIRGDVDKIIIGNYSNIQDCCVVHCSKG------YPTIIGDYVSIGHGAVIHGCRIEDNVLVGMNATILNGAKIGENCIIGANALVTQNKEIPPNSLVLGVPGRVVRELTEEEIKSIKENALRYVKLSE 153          
BLAST of CF838515 vs. ExPASy Swiss-Prot
Match: Y3753_PSEAE (Uncharacterized protein PA3753 OS=Pseudomonas aeruginosa GN=PA3753 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.551e-28
Identity = 59/160 (36.88%), Postives = 103/160 (64.38%), Query Frame = 1
Query:  241 DAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVHAAE 720
            D+++APSA++IG V++  G+S+W+G VLRGD   I +G  +N+QD S++H           P T+G  VTVGH+A+LHGC+V D + VG+ A +L+G  + ++ ++ A +L+ +   IP G +  G+P K +R+L++ +   +  SA +Y + A+ +A +
Sbjct:   15 DSWIAPSAAVIGKVRLDAGASVWFGAVLRGDNELIHIGEHSNVQDGSVMHTDMG------YPLTLGKGVTVGHNAMLHGCSVGDYSLVGINAVILNGAKIGKYCIIGANALIPEGKEIPDGSLVMGSPGKVVRELSEPQKKMLEASAAHYVHNARRYARD 168          
BLAST of CF838515 vs. ExPASy Swiss-Prot
Match: PAAY_ECOLI (Phenylacetic acid degradation protein paaY OS=Escherichia coli (strain K12) GN=paaY PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.099e-25
Identity = 64/191 (33.51%), Postives = 104/191 (54.45%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA-----QVHAAENAKSFD----EIEFEKVLRKK 771
            P V +++FV P+A +IGDV +G+G  +     LRGD   I V  G NIQDN ++H            T +G++  +GHSA+LHGC +   A VGM A ++DG V+  + +V A + V+    +P+  +  G+PAK +R+L+++E+A+  Q    Y  L       +H  E  +  +     + F++ LR K
Sbjct:   11 PVVPEESFVHPTAVLIGDVILGKGVYVGPNASLRGDFGRIVVKDGANIQDNCVMHGFPEQ------DTVVGEDGHIGHSAILHGCIIRRNALVGMNAVVMDGAVIGENSIVGASAFVKAKAEMPANYLIVGSPAKAIRELSEQELAWKKQGTHEYQVLVTRCKQTLHQVEPLREIEPGRKRLVFDENLRPK 195          
BLAST of CF838515 vs. ExPASy Swiss-Prot
Match: YTOA_BACSU (Uncharacterized transferase ytoA OS=Bacillus subtilis GN=ytoA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.150e-23
Identity = 58/162 (35.80%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLAQVH 711
            P +   AF+A +A+I GDV +G  SSIW+  V+RGDV    +G+  NIQD S +H + +          I D+ T+GH   LH   +   A +GMG+ +LDG  +     + AGSLV     IP G +  G PAK +R LT+E+   + +  + Y    Q +
Sbjct:   10 PDIHPTAFIADNATITGDVVIGEQSSIWFSVVIRGDVAPTRIGNRVNIQDLSCLHQSPNKT------LLIEDDATIGHQVTLHSAVIRKNALIGMGSIILDGAEIGEGAFIGAGSLVPPGKIIPPGHLAFGRPAKVIRPLTEEDRKDMQRIRSEYVEKGQYY 165          
BLAST of CF838515 vs. ExPASy Swiss-Prot
Match: CAIE_SALTY (Carnitine operon protein caiE OS=Salmonella typhimurium GN=caiE PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.833e-22
Identity = 59/159 (37.11%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  226 PAVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTTIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGVVVERHGMVAAGSLVRQNTRIPSGEVWGGNPAKFLRKLTDEEIAFISQSATNYSNLA 702
            P V  DAFV PSA +IGDV VG G  I     LRGD   + + +G+N+QD  ++H            T + +N  +GH A+LHGC V  +A VGM + ++DG V+    +VAA S V+   +  + ++  G+PA+ LR++TD+E+ +   +   Y +LA
Sbjct:   11 PVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLILEAGSNLQDGCIMHGYCDT------DTIVHENGHIGHGAILHGCVVGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKHLNTKEYQDLA 163          
The following BLAST results are available for this feature:
BLAST of CF838515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
Y2881_DICDI1.033e-4841.53Uncharacterized protein DDB_G0288155 OS=Dictyostel... [more]
YRDA_SHIFL4.659e-3345.91Protein yrdA OS=Shigella flexneri GN=yrdA PE=3 SV=... [more]
YRDA_ECOLI4.659e-3345.91Protein yrdA OS=Escherichia coli (strain K12) GN=y... [more]
UMP7_ARATH4.659e-3344.24Uncharacterized protein At5g63510, mitochondrial O... [more]
UMP8_ARATH1.038e-3243.64Uncharacterized protein At3g48680, mitochondrial O... [more]
Y304_METJA1.499e-3142.41Uncharacterized protein MJ0304 OS=Methanocaldococc... [more]
Y3753_PSEAE1.551e-2836.88Uncharacterized protein PA3753 OS=Pseudomonas aeru... [more]
PAAY_ECOLI6.099e-2533.51Phenylacetic acid degradation protein paaY OS=Esch... [more]
YTOA_BACSU1.150e-2335.80Uncharacterized transferase ytoA OS=Bacillus subti... [more]
CAIE_SALTY2.833e-2237.11Carnitine operon protein caiE OS=Salmonella typhim... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06M23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838515 ID=CF838515; Name=CF838515; organism=Citrus sinensis; type=EST; length=825bp
CAAAACCTCACTGAACTTGAGCTCCAAAAGTATCGACACTCAGTCACCGA
TCCCCAAAGCCAACAAGAGATGGGAACCCTAGGGCGAGCAGTTTACACCG
TTGGCTTCTGGATTCGCGAAACCGGTCAGGCCCTTGATCGCCTCGGCTGC
CGTCTCCAAGGCAACTACTACTTCCAAGAGCAACTGTCTAGGCATCGAAC
TCTGATGAACATATTTGATAAAGCTCCCGCAGTCGACAAGGATGCATTTG
TTGCTCCAAGTGCCTCTATCATTGGTGATGTTCAAGTGGGAAGAGGGTCA
TCTATTTGGTATGGATGTGTTTTGAGAGGGGATGTGAATAGCATCAGTGT
TGGATCAGGAACAAATATACAGGACAACTCCCTTGTGCATGTTGCGAAGT
CTAATCTAAGTGGGAAGGTGCTACCGACTACTATTGGGGACAATGTTACT
GTAGGCCATAGTGCTGTTTTACATGGCTGTACTGTTGAGGACGAGGCCTT
TGTTGGCATGGGAGCAACACTACTTGATGGTGTTGTTGTTGAGAGACATG
GCATGGTTGCTGCTGGATCTCTTGTGAGGCAGAATACCAGGATCCCTTCT
GGAGAGGTATGGGGAGGCAATCCAGCAAAGTTCCTGAGAAAGCTCACTGA
TGAAGAAATAGCCTTTATTTCCCAGTCAGCCACCAATTATTCCAACTTGG
CACAAGTTCATGCAGCTGAGAATGCGAAGTCCTTCGATGAGATTGAATTT
GAGAAAGTTCTTCGCAAGAAGTTTGCACGTCGGGATGAGGAATACGACTC
AATGCTCGGTGTTGTTCGTGAAACT
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