CF838527

Overview
NameCF838527
Unique NameCF838527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838527_ssr89 microsatellite CF838527_ssr89:89..109. BLAST: Citrus ESTs to Prunus persica proteins V1
CF838527_ssr397 microsatellite CF838527_ssr397:397..408. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11919 contig Csv1_Contig11919:14..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838527 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.624e-79
Identity = 161/231 (69.70%), Postives = 173/231 (74.89%), Query Frame = 1
Query:   64 MESRVLSRAXXXXXX--ISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGE--AAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILCQQLPLT 744
            MESRVLSRA        ++ L R PL N    S  S+K  G+V +GGN++WGRQLRP L        A L       LRP  ATA     G+DSAGE   APV FF RYPAL TGFFFF WYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSW VGLPKRAPID  LLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHT+KALEPFFNAAASQFIL Q +P+T
Sbjct:    1 MESRVLSRATTLSSLPTLNKLHRLPLAN---ASLPSVKSFGSVSDGGNLVWGRQLRPELCSPVLKKGASL-------LRPCPATAG----GNDSAGEEKVAPVGFFSRYPALTTGFFFFTWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWTVGLPKRAPIDGNLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQSIPIT 217          
BLAST of CF838527 vs. ExPASy Swiss-Prot
Match: TPT_FLAPR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.422e-77
Identity = 151/229 (65.94%), Postives = 167/229 (72.93%), Query Frame = 1
Query:   64 MESRVLSRAXXXXXXISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAG--KKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILCQQLPLT 744
            MESRVLS        I  L R               P      GGN++WGRQLRP+LL    ++P  L     K+++L+P  ATAS      DSAG+AAPV FF +YP LVTGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVS IHL VGVVYCL  WAVGLPKRAP+DS LLKLLIPVA CHALGHVTSNVSFAAVAVSFTHTIK+LEPFFNAAASQFIL Q +P+T
Sbjct:    1 MESRVLSSGATTISGIPRLTRPAGRTTTTTVVAVASPAKLNTNGGNLVWGRQLRPSLLNLDHSSPVSLVTKPVKRDVLKPCTATAS------DSAGDAAPVGFFAKYPFLVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSAIHLAVGVVYCLGGWAVGLPKRAPMDSNLLKLLIPVAFCHALGHVTSNVSFAAVAVSFTHTIKSLEPFFNAAASQFILGQSIPIT 223          
BLAST of CF838527 vs. ExPASy Swiss-Prot
Match: TPT1_BRAOB (Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 8.339e-76
Identity = 152/233 (65.24%), Postives = 175/233 (75.11%), Query Frame = 1
Query:   64 MESRVLSRAXXXXXXISSLRRSPLENHQNVSFIS------LKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILCQQLPLT 744
            MESRVL RA      +  LRR     ++  S  S       KPIG++GEGGN+I GRQLRP LLL+S          K+EIL+P+ A +   AEG DSAGE   V F  +YP LVTG    MWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSW+VGLPKRAP++S +LK+LIPVAVCHA+GHVTSNVSFAAVAVSFTHTIKALEPFFNA+ASQF+L Q +P+T
Sbjct:    1 MESRVLLRATETVTGVPQLRRPIRAINRQFSTASSSFTAFAKPIGSIGEGGNLISGRQLRPLLLLDS-------LPEKREILKPVRAAS---AEGGDSAGETK-VGFLGKYPWLVTGILLLMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLVSWSVGLPKRAPVNSDILKVLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNASASQFLLGQPIPIT 222          
BLAST of CF838527 vs. ExPASy Swiss-Prot
Match: TPT_FLATR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.089e-75
Identity = 148/229 (64.63%), Postives = 168/229 (73.36%), Query Frame = 1
Query:   64 MESRVLSRAXXXXXXISSLRRSPLENHQNVSFISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAG--KKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILCQQLPLT 744
            MESRVLS        +  L + P       +     P      GGNV+WGRQLRP+LL    ++P  L     K+++L+P  ATAS      DSAG+AAPV F  +YP LVTGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCL SW VGLPKRAP+DS +LKLLIPV  CHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF+L Q +P++
Sbjct:    1 MESRVLSSGATAISGVPRLTK-PAGRITTTTVAVAFPARLNATGGNVVWGRQLRPSLLNLDHSSPVSLVTKPVKRDVLKPCSATAS------DSAGDAAPVGFLAKYPFLVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLGSWTVGLPKRAPVDSNILKLLIPVGFCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQSIPIS 222          
BLAST of CF838527 vs. ExPASy Swiss-Prot
Match: TPT_SPIOL (Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.966e-73
Identity = 147/231 (63.64%), Postives = 170/231 (73.59%), Query Frame = 1
Query:   64 MESRVLSRAXXXXXXISSLRRSPLENHQNVSF---ISLK-PIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILCQQLPLT 744
            MESRVLSR       I++L +    + +  SF     +K P+G V +GG++ WGRQLRP LLLE      G    ++E       TA  P   +  +   A   F ++YPALVTG FFFMWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCL SW+VGLPKRAP+DSKLLKLLIPVAVCHA+GHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQF+L Q +P+T
Sbjct:    1 MESRVLSRTTA----IAALPKLFRPSREAASFGFATGVKTPVGLVKDGGSLTWGRQLRPVLLLEP--VQTGPVCSRRE------KTAVQPCRAASGSSGEAKTGFLEKYPALVTGSFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVVYCLASWSVGLPKRAPMDSKLLKLLIPVAVCHAIGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFVLGQSIPIT 219          
BLAST of CF838527 vs. ExPASy Swiss-Prot
Match: TPT_SOLTU (Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.607e-73
Identity = 141/194 (72.68%), Postives = 158/194 (81.44%), Query Frame = 1
Query:  160 ISLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILCQQLPL 741
            ++ KP+G +  G N+IWGRQLRPA+LLE+S         K+E ++P  A ASS A  SDS+G+A  V FF++   L TGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVSVIHL VGVVYCLVSW VGLPKRAPIDS  LKLL PVA CHALGHVTSNVSFAAV VSFTHT+KALEPFFNAAASQFIL QQ+PL
Sbjct:   45 VTAKPVGPLIAGPNLIWGRQLRPAILLETSP--------KRESIKPCSAAASSSAGSSDSSGDAK-VGFFNK-ATLTTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSVIHLAVGVVYCLVSWGVGLPKRAPIDSTQLKLLTPVAFCHALGHVTSNVSFAAVRVSFTHTVKALEPFFNAAASQFILGQQIPL 228          
BLAST of CF838527 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.378e-70
Identity = 130/194 (67.01%), Postives = 158/194 (81.44%), Query Frame = 1
Query:  163 SLKPIGAVGEGGNVIWGRQLRPALLLESSNAPAGLFAGKKEILRPILATASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILCQQLPLT 744
            ++K   AV +   ++WGRQLRPALLL ++  P+ L   ++  L+P       PA  ++SAGEA  V F ++YPALVTGFFFFMWYFLNVIFNILNK+IYNYFPYPYFVS+IHL+VGVVYCL+SW+VGLPKRAPI+  LLKLL PVA+CH +GH+TSNVSFAAVAVSF HTIKALEPFF+AAA+QFIL QQ+P +
Sbjct:   40 TVKCAAAVPDAAPIVWGRQLRPALLLPAALLPS-LQPARRHTLQP-------PAAAAESAGEAKSVGFLEKYPALVTGFFFFMWYFLNVIFNILNKKIYNYFPYPYFVSLIHLVVGVVYCLISWSVGLPKRAPINGTLLKLLFPVALCHGIGHITSNVSFAAVAVSFAHTIKALEPFFSAAATQFILGQQVPFS 225          
BLAST of CF838527 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.763e-25
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  385 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILCQQLP 738
            L  G +F  W+ LNV+FNI NK++ N +PYP+  S + L  G +  L+SWAVG+ +    D    K L PVAV H +GHV + VS + VAVSFTH IK+ EP F+   S+FIL +  P
Sbjct:   95 LKIGIYFATWWALNVVFNIYNKKVLNAYPYPWLTSTLSLAAGSLMMLISWAVGIVETPKTDFDFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFILGETFP 212          
BLAST of CF838527 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.546e-24
Identity = 54/119 (45.38%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  385 LVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILCQQLPL 741
            L  G +F  W+ LNV+FNI NK++ N FPYP+  S + L  G +  LVSWA  +      D +  K L PVAV H +GHV + VS + VAVSFTH IK+ EP F+   S+F + +  PL
Sbjct:   95 LKIGIYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLACGSLMMLVSWATRIADAPKTDLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFFMGETFPL 213          
BLAST of CF838527 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.933e-22
Identity = 60/168 (35.71%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  238 LESSNAPAGLFAGKKEILRPILAT------ASSPAEGSDSAGEAAPVRFFDRYPALVTGFFFFMWYFLNVIFNILNKRIYNYFPYPYFVSVIHLLVGVVYCLVSWAVGLPKRAPIDSKLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFIL 723
            L SS++P   ++G   +  P L T      A++  E  + +G+   V        L  G  F MWY  N+ FNI NK++      P  V+++   VG V     WA+ L KR  I +  L  ++P+AV H LG++ +N+S   V+VSFTHTIKA+EPFF+   S   L
Sbjct:   53 LASSDSPLRAWSGLPSVSSPSLDTNRFKTAATAVPEEGEGSGKMTKV--------LELGLLFAMWYLFNIYFNIYNKQVLKALHAPMTVTLVQFAVGSVLITFMWALNLYKRPKISAAQLAAILPLAVVHTLGNLFTNMSLGKVSVSFTHTIKAMEPFFSVVLSAMFL 212          
The following BLAST results are available for this feature:
BLAST of CF838527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TPT_PEA1.624e-7969.70Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLAPR4.422e-7765.94Triose phosphate/phosphate translocator, chloropla... [more]
TPT1_BRAOB8.339e-7665.24Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLATR1.089e-7564.63Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SPIOL2.966e-7363.64Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SOLTU6.607e-7372.68Triose phosphate/phosphate translocator, chloropla... [more]
TPT_MAIZE1.378e-7067.01Triose phosphate/phosphate translocator, chloropla... [more]
GPT1_ARATH1.763e-2546.61Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
GPT2_ARATH2.546e-2445.38Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
TPT2_BRAOB6.933e-2235.71Triose phosphate/phosphate translocator, non-green... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06N13_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838527 ID=CF838527; Name=CF838527; organism=Citrus sinensis; type=EST; length=746bp
GCTCACACAGGCTACTAAAACCACATTTGTTTCTCTCTCAAAAGTAGCCA
CAGCGGTGACACGATGGAGTCGCGAGTGCTGTCACGCGCCACCACCACCA
CCACCACCATTTCAAGCCTCCGAAGATCGCCGCTTGAGAACCACCAAAAC
GTCAGCTTCATCTCGTTGAAGCCGATTGGAGCCGTTGGTGAAGGCGGGAA
TGTCATTTGGGGAAGACAGCTACGTCCTGCTCTGCTCCTCGAGAGCTCCA
ATGCTCCGGCTGGTCTTTTCGCCGGAAAGAAGGAGATTCTCCGTCCAATC
CTCGCCACCGCTTCTTCTCCTGCCGAAGGAAGCGATTCCGCCGGAGAAGC
TGCTCCGGTCAGATTCTTTGACAGGTATCCGGCCCTCGTGACCGGGTTCT
TCTTCTTCATGTGGTACTTCCTGAACGTGATATTCAACATTCTTAACAAG
AGGATTTACAATTACTTCCCATATCCTTATTTTGTGTCCGTTATTCATTT
GTTGGTTGGGGTGGTTTACTGTTTGGTGAGCTGGGCTGTGGGCCTTCCCA
AGCGAGCTCCTATTGATTCGAAACTCCTGAAGCTCTTAATCCCTGTTGCT
GTGTGTCATGCATTGGGCCATGTTACCAGCAACGTGTCTTTTGCAGCAGT
TGCTGTCTCCTTTACCCATACCATCAAAGCTCTTGAGCCCTTCTTCAACG
CTGCTGCTTCACAATTCATTCTATGCCAACAGTTACCTCTGACTCT
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