CF838528
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF838528 vs. ExPASy Swiss-Prot
Match: DDB1A_ARATH (DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1 SV=1) HSP 1 Score: 471.47 bits (1212), Expect = 2.207e-132 Identity = 229/251 (91.24%), Postives = 244/251 (97.21%), Query Frame = 2 Query: 2 GKLLVAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKKVEE 754 GKLL AINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLL+YKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNL TV+KNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDS++GQIPTVIFGTVNGVIGVIASLP EQY FLEKLQ++LRKVIKGVGGL+HEQWRSFNNEK+T +A+NFLDGDLIESFLDLSR +M++ISK+MNV VEELCK+VEE Sbjct: 833 GKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLLTVKKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEE 1083
BLAST of CF838528 vs. ExPASy Swiss-Prot
Match: DDB1_SOLLC (DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1) HSP 1 Score: 465.692 bits (1197), Expect = 1.211e-130 Identity = 233/252 (92.46%), Postives = 242/252 (96.03%), Query Frame = 2 Query: 2 GKLLVAINQKIQLYKWMLRDDG-TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKKVEE 754 GKLL AINQKIQLYKW R+DG +RELQ+ECGHHGHILALYVQTRGDFIVVGDLMKSISLLI+KHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEER RLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPH+QYLFLEKLQTNLRKVIKGVGGL+HEQWRSF NEKKTVDAKNFLDGDLIESFLDLSR RM+EISK M+V VEEL K+VEE Sbjct: 834 GKLLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLIFKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERSRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEE 1085
BLAST of CF838528 vs. ExPASy Swiss-Prot
Match: DDB1_SOLCE (DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1) HSP 1 Score: 465.692 bits (1197), Expect = 1.211e-130 Identity = 233/252 (92.46%), Postives = 242/252 (96.03%), Query Frame = 2 Query: 2 GKLLVAINQKIQLYKWMLRDDG-TRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKKVEE 754 GKLL AINQKIQLYKW R+DG +RELQ+ECGHHGHILALYVQTRGDFIVVGDLMKSISLLI+KHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEER RLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPH+QYLFLEKLQTNLRKVIKGVGGL+HEQWRSF NEKKTVDAKNFLDGDLIESFLDLSR RM+EISK M+V VEEL K+VEE Sbjct: 839 GKLLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLIFKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERSRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEE 1090
BLAST of CF838528 vs. ExPASy Swiss-Prot
Match: DDB1B_ARATH (DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=1 SV=2) HSP 1 Score: 450.669 bits (1158), Expect = 4.032e-126 Identity = 217/251 (86.45%), Postives = 239/251 (95.22%), Query Frame = 2 Query: 2 GKLLVAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKKVEE 754 GKLL +INQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFI VGDLMKSISLLIYKHEEGAIEERARDYNANWM+AVEIL+DDIYLG +N FN+FTV+KN+EGATDEER R+EVVGEYH+GEFVNRFRHGSLVM+LPDSD+GQIPTVIFGTV+G+IGVIASLP EQY FLEKLQT+LRKVIKGVGGL+HEQWRSFNNEK+T +AK +LDGDLIESFLDLSR +M+EISK M+V VEELCK+VEE Sbjct: 833 GKLLASINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIAVGDLMKSISLLIYKHEEGAIEERARDYNANWMTAVEILNDDIYLGTDNCFNIFTVKKNNEGATDEERARMEVVGEYHIGEFVNRFRHGSLVMKLPDSDIGQIPTVIFGTVSGMIGVIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEE 1083
BLAST of CF838528 vs. ExPASy Swiss-Prot
Match: DDB1_XENLA (DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 9.130e-70 Identity = 138/262 (52.67%), Postives = 181/262 (69.08%), Query Frame = 2 Query: 2 GKLLVAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV----------SVEELCKKVEE 754 GKLL +IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ + + +V++L K VEE Sbjct: 878 GKLLASINSTVRLYEWTAE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSPPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVIANLQIDDGSGMKRETTVDDLIKVVEE 1135
BLAST of CF838528 vs. ExPASy Swiss-Prot
Match: DDB1_CHICK (DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 2.034e-69 Identity = 138/262 (52.67%), Postives = 180/262 (68.70%), Query Frame = 2 Query: 2 GKLLVAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV----------SVEELCKKVEE 754 GKLL +IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ + + +V++L K VEE Sbjct: 878 GKLLASINSTVRLYEWTAE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEE 1135
BLAST of CF838528 vs. ExPASy Swiss-Prot
Match: DDB1_PONAB (DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 2.656e-69 Identity = 137/262 (52.29%), Postives = 179/262 (68.32%), Query Frame = 2 Query: 2 GKLLVAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTM----------NVSVEELCKKVEE 754 GKLL +IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE Sbjct: 878 GKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1135
BLAST of CF838528 vs. ExPASy Swiss-Prot
Match: DDB1_MOUSE (DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2) HSP 1 Score: 261.922 bits (668), Expect = 2.656e-69 Identity = 137/262 (52.29%), Postives = 179/262 (68.32%), Query Frame = 2 Query: 2 GKLLVAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTM----------NVSVEELCKKVEE 754 GKLL +IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE Sbjct: 878 GKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGEASTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1135
BLAST of CF838528 vs. ExPASy Swiss-Prot
Match: DDB1_HUMAN (DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 2.656e-69 Identity = 137/262 (52.29%), Postives = 179/262 (68.32%), Query Frame = 2 Query: 2 GKLLVAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTM----------NVSVEELCKKVEE 754 GKLL +IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE Sbjct: 878 GKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1135
BLAST of CF838528 vs. ExPASy Swiss-Prot
Match: DDB1_CERAE (DNA damage-binding protein 1 OS=Cercopithecus aethiops GN=DDB1 PE=1 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 2.656e-69 Identity = 137/262 (52.29%), Postives = 179/262 (68.32%), Query Frame = 2 Query: 2 GKLLVAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTM----------NVSVEELCKKVEE 754 GKLL +IN ++LY+W +EL++EC H+ +I+ALY++T+GDFI+VGDLM+S+ LL YK EG EE ARD+N NWMSAVEILDDD +LGAEN FNLF +K+S TDEER L+ VG +HLGEFVN F HGSLVM+ L ++ +V+FGTVNG+IG++ SL Y L +Q L KVIK VG + H WRSF+ E+KT A F+DGDLIESFLD+SR +M E+ + + ++L K VEE Sbjct: 878 GKLLASINSTVRLYEWTTE----KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEE 1135 The following BLAST results are available for this feature:
BLAST of CF838528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF838528 ID=CF838528; Name=CF838528; organism=Citrus sinensis; type=EST; length=755bpback to top |