CF838529

Overview
NameCF838529
Unique NameCF838529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12395 contig Csv1_Contig12395:367..1158. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_CATRO (S-adenosylmethionine decarboxylase proenzyme OS=Catharanthus roseus GN=SAMDC PE=1 SV=1)

HSP 1 Score: 332.798 bits (852), Expect = 1.327e-90
Identity = 162/213 (76.06%), Postives = 187/213 (87.79%), Query Frame = 1
Query:  154 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            MALP SAIGFEGYEKRLE+SFFE   FADP G+GLR+L+K Q+DEIL+PAECTIV SLSN++LDSYVLSESSLFVYPYK+IIKTCGTTKLLLSIPAILKLAESLSLSVR+V+YTRGSFIF GAQ FPHRSFSEEV +LD +FGK G++S AF+MG+PD  ++WHVYSAS  +    +P YTLEMCMTGLDR++ASVFYK+  SSAA+MT  SG
Sbjct:    1 MALPASAIGFEGYEKRLEISFFESSFFADPDGKGLRALNKSQIDEILEPAECTIVDSLSNQYLDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPAILKLAESLSLSVRNVKYTRGSFIFPGAQSFPHRSFSEEVELLDNYFGKLGLESNAFIMGNPDQPQKWHVYSASVGSEQSSDPTYTLEMCMTGLDREKASVFYKSESSSAALMTTRSG 213          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_SOLTU (S-adenosylmethionine decarboxylase proenzyme OS=Solanum tuberosum GN=SAMDC PE=1 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.242e-88
Identity = 163/214 (76.17%), Postives = 185/214 (86.45%), Query Frame = 1
Query:  151 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            +M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSLSK QLDEIL PAECTIV +LSN+++DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP IL+LAE+LSL V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MGSPD T++WHVYSASA +    +PVYTLEMCMTGLDR++ASVFYKT ESSAA MT  SG
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKTQKWHVYSASAGSVQSNDPVYTLEMCMTGLDREKASVFYKTEESSAAHMTVRSG 215          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_NICSY (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana sylvestris GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.242e-88
Identity = 165/213 (77.46%), Postives = 182/213 (85.45%), Query Frame = 1
Query:  154 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            MALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP ILKLAE+LSL V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MGSPD  ++WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SG
Sbjct:    3 MALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILKLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKAQKWHVYSASAGPIQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSG 215          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_TOBAC (S-adenosylmethionine decarboxylase proenzyme OS=Nicotiana tabacum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.720e-88
Identity = 164/212 (77.36%), Postives = 181/212 (85.38%), Query Frame = 1
Query:  157 ALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            ALPVSAIGFEG+EKRLE+SFFEPG+FADP G+GLRSLSK QLDEIL PAECTIV SLSN+ +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP ILKLAE+LSL V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MGSPD  ++WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SG
Sbjct:    4 ALPVSAIGFEGFEKRLEISFFEPGLFADPNGKGLRSLSKAQLDEILGPAECTIVDSLSNDDVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILKLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGSPDKAQKWHVYSASAGPIQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSG 215          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 5.219e-87
Identity = 156/213 (73.24%), Postives = 182/213 (85.45%), Query Frame = 1
Query:  154 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            MAL  SAIGFEGYEKRLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP IL+LA+ LSL V+SV+YTRGSF F   QP+PHR+FSEEVA+LDG+FGK G  S A+VMG     ++WHVYSASAE+  +  P+YTLEMCMTGLD+K ASVF+KT  SSAA+MT+ SG
Sbjct:    1 MALSTSAIGFEGYEKRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPILELADGLSLKVKSVKYTRGSFNFPEVQPYPHRNFSEEVAILDGYFGKLGTGSKAYVMGGAGKQQQWHVYSASAESAENTFPIYTLEMCMTGLDKKSASVFFKTQSSSAAVMTDASG 213          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_SOLCI (S-adenosylmethionine decarboxylase proenzyme OS=Solanum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.816e-87
Identity = 160/213 (75.12%), Postives = 182/213 (85.45%), Query Frame = 1
Query:  154 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            M LPVSAIGFEG+EKRLE+SF EPG+FADP G+GLRSL+K QLDEIL PAECTIV +LSN+++DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP IL+LAE+LSL V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MG+PD T++WHVYSASA      +PVYTLEMCM GLDR++ASVFYKT ESSAA MT  SG
Sbjct:    1 MDLPVSAIGFEGFEKRLEISFVEPGLFADPNGKGLRSLTKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGNPDKTQKWHVYSASAGTVQCNDPVYTLEMCMAGLDREKASVFYKTEESSAAHMTVRSG 213          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_DATST (S-adenosylmethionine decarboxylase proenzyme OS=Datura stramonium GN=SAMDC PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.816e-87
Identity = 160/214 (74.77%), Postives = 183/214 (85.51%), Query Frame = 1
Query:  151 KMALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            +M LPVSAIGFEG+EKRLE+SF EPG+F+DP G+GLRSLSK QLDEIL PAECTIV +LSN+++DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP IL+LAE+LSL V+ VRYTRGSFIF GAQ FPHR FSEEVAVLDG+FGK    S A +MG+PD T++WHVYSASA      +PVYTLEMCMTGLDR++ASVFYKT  SSAA MT  SG
Sbjct:    2 EMDLPVSAIGFEGFEKRLEISFVEPGLFSDPNGKGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSESSLFVYSYKIIIKTCGTTKLLLAIPPILRLAETLSLKVQDVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLAAGSKAVIMGNPDKTQKWHVYSASAGPVQSNDPVYTLEMCMTGLDREKASVFYKTEGSSAAHMTVRSG 215          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.885e-85
Identity = 153/213 (71.83%), Postives = 179/213 (84.04%), Query Frame = 1
Query:  154 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            MAL  SAIGFEGYE RLE+SFFE G+F+DP GRGLR+LSK QLD++LKPAECTIVSSLSN  +DSYVLSESSLFVYPYK+IIKTCGTTKLLLSIP IL+LA+ LSL V+SV+YTRGSF F   QP+PHR+FSEEVA+LD +FGK    S A+VMG     ++WHVYSASAE+  +  P+YTLEMCMTGLD+K ASVF+KT  SSAA+MT+ SG
Sbjct:    1 MALSTSAIGFEGYENRLEISFFEAGIFSDPEGRGLRALSKEQLDKVLKPAECTIVSSLSNNEVDSYVLSESSLFVYPYKIIIKTCGTTKLLLSIPPILELADGLSLKVKSVKYTRGSFNFPEVQPYPHRNFSEEVAILDSYFGKLSTGSKAYVMGGAGKQQQWHVYSASAESAENTFPIYTLEMCMTGLDKKSASVFFKTQSSSAAVMTDASG 213          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.421e-84
Identity = 154/213 (72.30%), Postives = 180/213 (84.51%), Query Frame = 1
Query:  154 MALPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            M+  VSAIGFEG+EKRLE+SFFEP  FADP G+GLR LSK+QLDE L PAECTIV+SLSNEH+DSYVLSESSLFVY YK+IIKTCGTTKLL SIP ILKLA+SLSL+VRSVRYTRG FIF GAQ +PHRSFSEEV+VLD +FGK G  S A++MG  D  ++WHVYSA A +   ++PVYT+EMCMT L+R +ASVFYKTN SSA  +T++SG
Sbjct:    1 MSSEVSAIGFEGFEKRLEISFFEPSFFADPEGKGLRVLSKNQLDEFLGPAECTIVASLSNEHVDSYVLSESSLFVYAYKIIIKTCGTTKLLKSIPPILKLADSLSLTVRSVRYTRGCFIFPGAQSYPHRSFSEEVSVLDNYFGKLGSGSKAYIMGGSDKQQKWHVYSACAASTRTLDPVYTMEMCMTSLNRDKASVFYKTNSSSATSVTDNSG 213          
BLAST of CF838529 vs. ExPASy Swiss-Prot
Match: DCAM_VICFA (S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 5.401e-84
Identity = 155/211 (73.46%), Postives = 178/211 (84.36%), Query Frame = 1
Query:  160 LPVSAIGFEGYEKRLEVSFFEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEHLDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRYTRGSFIFAGAQPFPHRSFSEEVAVLDGHFGKFGMDSTAFVMGSPDNTKRWHVYSASAEAGSHVNPVYTLEMCMTGLDRKRASVFYKTNESSAAMMTEDSG 792
            + VSAIGFEG+EKRLE+SF +PG+F+DP GRGLRSL+K QLDEIL PAECTIVSSL+NE +DSYVLSESSLFVY YK+IIKTCGTTKLLL+IP ILKLAES+SL VR+VRYTRGSFIF GAQ FPHR FSEEVAVLDG FGK G  S A++MG  D  + WHVY ASA++ S  + VYTLEMCMTGLDR++ASVF+K    SAA MT +SG
Sbjct:    1 MAVSAIGFEGFEKRLEISFSDPGLFSDPQGRGLRSLTKSQLDEILAPAECTIVSSLANEDVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKLAESISLDVRAVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGFFGKLGSGSKAYIMGGSDEAQNWHVYCASADSVSPADSVYTLEMCMTGLDREKASVFFKQQTGSAAEMTVNSG 211          
The following BLAST results are available for this feature:
BLAST of CF838529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
DCAM_CATRO1.327e-9076.06S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_SOLTU1.242e-8876.17S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_NICSY1.242e-8877.46S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_TOBAC4.720e-8877.36S-adenosylmethionine decarboxylase proenzyme OS=Ni... [more]
DCAM_IPONI5.219e-8773.24S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_SOLCI6.816e-8775.12S-adenosylmethionine decarboxylase proenzyme OS=So... [more]
DCAM_DATST6.816e-8774.77S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_IPOBA4.885e-8571.83S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_DAUCA1.421e-8472.30S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_VICFA5.401e-8473.46S-adenosylmethionine decarboxylase proenzyme OS=Vi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838529 ID=CF838529; Name=CF838529; organism=Citrus sinensis; type=EST; length=792bp
AAAAAGCTCACTACTACTGCAATTTTAATTTTTTTTAGTTTTAGCCGTCT
TAATACTGCAATTTACTTGGCCTATTTCTTTTTCGACTTCCCTCGTTCTC
TCGTTCTGCCCTCTTTGCTCTTTGCAATTGTCATTTGTTTTCTGTAAGGC
AAGATGGCCTTGCCAGTCTCTGCAATTGGATTTGAAGGTTATGAAAAGAG
GCTTGAAGTTTCCTTTTTTGAGCCTGGTGTCTTTGCTGATCCTGGAGGTA
GGGGCCTCCGCTCTCTGTCAAAACATCAATTGGATGAAATACTGAAACCT
GCGGAATGCACAATTGTTTCTTCGTTGTCAAATGAACATCTTGATTCATA
TGTCCTCTCAGAATCAAGCCTCTTTGTGTACCCTTACAAAGTTATTATCA
AAACTTGTGGGACTACCAAGCTGCTTCTTTCAATCCCTGCCATCCTCAAG
TTAGCTGAGTCCCTCTCGTTGTCTGTTCGATCTGTGAGATACACTCGTGG
AAGCTTCATATTTGCTGGGGCTCAGCCATTTCCACACCGTAGCTTCTCTG
AGGAAGTAGCTGTCCTTGATGGACACTTTGGCAAGTTTGGTATGGACAGC
ACAGCTTTTGTCATGGGTAGTCCTGACAACACAAAGAGATGGCATGTTTA
CTCTGCCTCTGCTGAAGCAGGAAGCCATGTAAACCCAGTTTACACTCTAG
AGATGTGCATGACTGGTTTGGACAGAAAGAGGGCATCTGTCTTCTACAAA
ACTAATGAAAGCTCAGCCGCTATGATGACCGAGGACTCTGGC
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