CF838533

Overview
NameCF838533
Unique NameCF838533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838533_ssr264 microsatellite CF838533_ssr264:264..275. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 8.064e-59
Identity = 115/172 (66.86%), Postives = 135/172 (78.49%), Query Frame = 2
Query:  290 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 805
            KP +L+ EKLG+AG++LL EF +VDC+Y+LSPE+L  K++  DALIVRSGTKV R+VFE++ GRLKVVGRAGVGIDNVDL AATE GCL                        RNVAQADAS+KAGKW+R+KYVGVSLVGKTLAV+GFGKVG+EVARRAKGLGM VI+HDPY
Sbjct:   82 KPRILVTEKLGEAGVNLLREFGDVDCSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMTVISHDPY 253          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.874e-34
Identity = 73/169 (43.20%), Postives = 102/169 (60.36%), Query Frame = 2
Query:  299 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 805
            +L+ + L +  + +L E   V+ A  L+ EEL  KI   D L+VRSGTKV RDV E  A +LKV+GRAGVG+DN+D+ AATE G +                        RN+ QA AS+K G+W R ++ G+ L GKTL V+G G++G +V +RAK  GM++I +DPY
Sbjct:    4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEK-AEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASLKRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPY 171          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.097e-31
Identity = 71/169 (42.01%), Postives = 102/169 (60.36%), Query Frame = 2
Query:  299 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 805
            VLIA+ + + G+  L E A V     ++PEEL   I   DA++VRS TKV R+V E+ A RLK++ RAGVG+DNVD+ AAT+ G +                        R +A AD SVK GKW++N+++G+ L GKTL ++G G++GS+V  R K  GM ++ +DPY
Sbjct:    6 VLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEA-APRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKNRFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPY 173          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.136e-28
Identity = 67/170 (39.41%), Postives = 103/170 (60.59%), Query Frame = 2
Query:  299 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 805
            VL+AE + +  +D + +    V+    +S EEL  ++   +A++VRS TKV+ +V ++ A  LK++GRAGVG+DN+D+ AAT+ G +                        R + QAD SVK GKW+R K++G+ L GKT  V+G G+VG EVA+R K L M+V+A+DP+
Sbjct:    3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQA-AKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPF 171          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.797e-27
Identity = 61/169 (36.09%), Postives = 99/169 (58.58%), Query Frame = 2
Query:  299 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 805
            VL+++ + Q G+D+L + A VD    LS  E+   +   DA+++RS TKV   + ++ + +LK++GRAGVG+DN+D+ AAT  G +                        R++  A+ SVK  KW+R +++G  +  KTL V+G GK+GS VA  AK +GM ++A+DP+
Sbjct:   32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS-QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSVKESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPF 199          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_PONAB (D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.797e-27
Identity = 67/143 (46.85%), Postives = 85/143 (59.44%), Query Frame = 2
Query:  374 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 802
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R + LGM  I +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVAIRMQSLGMKTIGYDP 176          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.771e-27
Identity = 66/143 (46.15%), Postives = 84/143 (58.74%), Query Frame = 2
Query:  374 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 802
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R +  GM  I +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDP 176          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 121.709 bits (304), Expect = 4.771e-27
Identity = 66/143 (46.15%), Postives = 84/143 (58.74%), Query Frame = 2
Query:  374 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 802
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R +  GM  I +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDP 176          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 121.709 bits (304), Expect = 4.771e-27
Identity = 66/143 (46.15%), Postives = 84/143 (58.74%), Query Frame = 2
Query:  374 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 802
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW+R K++G  L GKTL +LG G++G EVA R +  GM  I +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDP 176          
BLAST of CF838533 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 1.063e-26
Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = 2
Query:  374 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDP 802
            NLS EEL  ++  C+ LIVRS TKV  DV  ++A +L+VVGRAG G+DNVDL AAT  G L                        R + QA AS+K GKW R K++G  L GKTL +LG G++G EVA R +  GM  + +DP
Sbjct:   35 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDP 176          
The following BLAST results are available for this feature:
BLAST of CF838533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SERA_ARATH8.064e-5966.86D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
SERA_METJA6.874e-3443.20D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
SERA_METTH1.097e-3142.01D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_ARCFU1.136e-2839.41D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
SERA_SYNY32.797e-2736.09D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
SERA_PONAB2.797e-2746.85D-3-phosphoglycerate dehydrogenase OS=Pongo abelii... [more]
SERA_PANTR4.771e-2746.15D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_MACFA4.771e-2746.15D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
SERA_HUMAN4.771e-2746.15D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
SERA_RAT1.063e-2645.45D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06N19_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838533 ID=CF838533; Name=CF838533; organism=Citrus sinensis; type=EST; length=807bp
AGGACCAACCATCCAAACACGCCACTATTATAAATTCATATTTCTCCATA
CATCTCTCCCGCTCTCGCTCCACTGCACTCCCTCTCCCCATACGACGCCG
CTTTAACCACCCCGAAAAATGGCCACGTCAGCAGCCTCCTGCGCTGCCTC
CCTCCGTCAGCCTTCCCTCAAGCTATCACTGTCTTCCAAACACTCTCTTT
CCCCTCTATTCTCCGTCTCCTTCAACCACAAGCGGGCCCCGCCGCGGCTC
GTAATAATCGCATCCGCCGCCGCCGACGGCATCTCCTCAAAACCGACCGT
TTTGATCGCCGAGAAGCTCGGACAGGCCGGCTTGGATCTTCTCAACGAGT
TCGCCAACGTGGACTGCGCATACAACTTGTCGCCAGAGGAGCTCTGCACG
AAGATCTCGCTCTGCGACGCGCTGATCGTGCGCAGCGGCACGAAGGTCAA
TCGCGACGTGTTCGAGTCGTCAGCTGGAAGGTTGAAGGTCGTTGGGAGAG
CCGGTGTTGGTATTGATAATGTGGATCTGGCTGCGGCTACTGAGTTTGGT
TGCTTGGTTGTGAACGCGCCGACGGCGAATACCGTTGCGGCTGCTGAGCA
TGGGATCGCGCTTTTGGCTGCCATGGCTAGAAATGTCGCCCAGGCTGATG
CCTCTGTTAAGGCTGGAAAGTGGCAAAGGAACAAATATGTGGGTGTCTCC
CTTGTGGGTAAAACACTTGCTGTATTGGGATTCGGAAAGGTTGGATCAGA
AGTTGCTCGTCGTGCCAAGGGTCTGGGTATGCATGTCATTGCACATGATC
CGTATGC
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