CF838536

Overview
NameCF838536
Unique NameCF838536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3306 contig Csv1_Contig3306:52..889. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838536 vs. ExPASy Swiss-Prot
Match: Y2006_MYCTU (Uncharacterized glycosyl hydrolase Rv2006/MT2062 OS=Mycobacterium tuberculosis GN=Rv2006 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.126e-19
Identity = 63/188 (33.51%), Postives = 101/188 (53.72%), Query Frame = 1
Query:  268 IARHPSALSKFEEIVNASKGKKIVMFLDYDGTLAPIVEDPDRAFMTNEMREAVRDVARYFPTAIVTGRCRDKVFSFVKLAGLYYAGSHGMDIEGPSKKRRYKKGNHGVLCQPASEFLPMINEVYQTLLEKTKSIPGAKVENNKFCLSVHFRCVDENSWGTLAEQVRVVLDKYPKLTLTQGRMVLEIVP 831
            I+  P AL  + ++     G++  +FLD+DGTL+ IVE P+ A + +   EA+R +A   P A+++GR    V + VK+ GL+ AGSHG ++  P        G+H      A+  +  + E    L +  + I GA VE+ +F ++VH+R V ++S   L   VR  L     L +T GR V+E+ P
Sbjct:  260 ISTIPDALQVYSQLKRLLTGRRPAVFLDFDGTLSDIVERPEAATLVDGAAEALRALAAQCPVAVISGRDLADVRNRVKVDGLWLAGSHGFELVAPD-------GSHHQNA-AATAAIDGLAEAAAQLADALREIAGAVVEHKRFAVAVHYRNVADDSVDNLIAAVR-RLGHAAGLRVTTGRKVVELRP 438          
BLAST of CF838536 vs. ExPASy Swiss-Prot
Match: OTSB_MYCUA (Trehalose-phosphate phosphatase OS=Mycobacterium ulcerans (strain Agy99) GN=otsB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.668e-18
Identity = 62/189 (32.80%), Postives = 96/189 (50.79%), Query Frame = 1
Query:  274 RHPSALSKFEEIVNASKGKKI---VMFLDYDGTLAPIVEDPDRAFMTNEMREAVRDVARYFPTAIVTGRCRDKVFSFVKLAGLYYAGSHGMDIEGPSKKRRYKKGNHGVLCQPASEFLPMINEVYQTLLEKTKSIPGAKVENNKFCLSVHFRCVDENSWGTLAEQVRVVLDKYPKLTLTQGRMVLEIVP 831
            RH S L    + +    G  +    +F D+DGTL+ IV+DPD A  T     A++ +A   P AI++GR    V   V L G++YAGSHG ++  P        G H    + A+  +P++ +    L ++  SIPG  VE+ +F ++ H+R    N  G +A  VR    +   L +T GR V+E+ P
Sbjct:  122 RHMSELPDALQALGRPDGLTVPRPAVFFDFDGTLSEIVDDPDAATPTAGAVAALQQLAAQCPVAILSGRDLADVSQRVGLPGIWYAGSHGFELTAPD-------GTHH-QNEAAAAAIPVLEQAAAQLRDRLGSIPGVMVEHKRFGVATHYRNAARNRVGKIAAVVRAA-GQRDGLRVTTGREVIELHP 301          
BLAST of CF838536 vs. ExPASy Swiss-Prot
Match: OTSB_MYCTU (Trehalose-phosphate phosphatase OS=Mycobacterium tuberculosis GN=otsB PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-17
Identity = 55/164 (33.54%), Postives = 89/164 (54.27%), Query Frame = 1
Query:  340 MFLDYDGTLAPIVEDPDRAFMTNEMREAVRDVARYFPTAIVTGRCRDKVFSFVKLAGLYYAGSHGMDIEGPSKKRRYKKGNHGVLCQPASEFLPMINEVYQTLLEKTKSIPGAKVENNKFCLSVHFRCVDENSWGTLAEQVRVVLDKYPKLTLTQGRMVLEIVP 831
            +F D+DGTL+ IVEDPD A++     EA++ +A   P A+++GR    V   V L G++YAGSHG ++  P        G H      A+  +P++ +    L ++    PG  VE+ +F ++VH+R    +  G +A  VR    ++  L +T GR V+E+ P
Sbjct:  144 VFFDFDGTLSDIVEDPDAAWLAPGALEALQKLAARCPIAVLSGRDLADVTQRVGLPGIWYAGSHGFELTAPD-------GTHH-QNDAAAAAIPVLKQAAAELRQQLGPFPGVVVEHKRFGVAVHYRNAARDRVGEVAAAVRTAEQRH-ALRVTTGREVIELRP 298          
BLAST of CF838536 vs. ExPASy Swiss-Prot
Match: OTSB_MYCTA (Trehalose-phosphate phosphatase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=otsB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-17
Identity = 55/164 (33.54%), Postives = 89/164 (54.27%), Query Frame = 1
Query:  340 MFLDYDGTLAPIVEDPDRAFMTNEMREAVRDVARYFPTAIVTGRCRDKVFSFVKLAGLYYAGSHGMDIEGPSKKRRYKKGNHGVLCQPASEFLPMINEVYQTLLEKTKSIPGAKVENNKFCLSVHFRCVDENSWGTLAEQVRVVLDKYPKLTLTQGRMVLEIVP 831
            +F D+DGTL+ IVEDPD A++     EA++ +A   P A+++GR    V   V L G++YAGSHG ++  P        G H      A+  +P++ +    L ++    PG  VE+ +F ++VH+R    +  G +A  VR    ++  L +T GR V+E+ P
Sbjct:  144 VFFDFDGTLSDIVEDPDAAWLAPGALEALQKLAARCPIAVLSGRDLADVTQRVGLPGIWYAGSHGFELTAPD-------GTHH-QNDAAAAAIPVLKQAAAELRQQLGPFPGVVVEHKRFGVAVHYRNAARDRVGEVAAAVRTAEQRH-ALRVTTGREVIELRP 298          
BLAST of CF838536 vs. ExPASy Swiss-Prot
Match: OTSB_MYCBP (Trehalose-phosphate phosphatase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=otsB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-17
Identity = 55/164 (33.54%), Postives = 89/164 (54.27%), Query Frame = 1
Query:  340 MFLDYDGTLAPIVEDPDRAFMTNEMREAVRDVARYFPTAIVTGRCRDKVFSFVKLAGLYYAGSHGMDIEGPSKKRRYKKGNHGVLCQPASEFLPMINEVYQTLLEKTKSIPGAKVENNKFCLSVHFRCVDENSWGTLAEQVRVVLDKYPKLTLTQGRMVLEIVP 831
            +F D+DGTL+ IVEDPD A++     EA++ +A   P A+++GR    V   V L G++YAGSHG ++  P        G H      A+  +P++ +    L ++    PG  VE+ +F ++VH+R    +  G +A  VR    ++  L +T GR V+E+ P
Sbjct:  144 VFFDFDGTLSDIVEDPDAAWLAPGALEALQKLAARCPIAVLSGRDLADVTQRVGLPGIWYAGSHGFELTAPD-------GTHH-QNDAAAAAIPVLKQAAAELRQQLGPFPGVVVEHKRFGVAVHYRNAARDRVGEVAAAVRTAEQRH-ALRVTTGREVIELRP 298          
BLAST of CF838536 vs. ExPASy Swiss-Prot
Match: OTSB_MYCBO (Trehalose-phosphate phosphatase OS=Mycobacterium bovis GN=otsB PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.263e-17
Identity = 55/164 (33.54%), Postives = 89/164 (54.27%), Query Frame = 1
Query:  340 MFLDYDGTLAPIVEDPDRAFMTNEMREAVRDVARYFPTAIVTGRCRDKVFSFVKLAGLYYAGSHGMDIEGPSKKRRYKKGNHGVLCQPASEFLPMINEVYQTLLEKTKSIPGAKVENNKFCLSVHFRCVDENSWGTLAEQVRVVLDKYPKLTLTQGRMVLEIVP 831
            +F D+DGTL+ IVEDPD A++     EA++ +A   P A+++GR    V   V L G++YAGSHG ++  P        G H      A+  +P++ +    L ++    PG  VE+ +F ++VH+R    +  G +A  VR    ++  L +T GR V+E+ P
Sbjct:  144 VFFDFDGTLSDIVEDPDAAWLAPGALEALQKLAARCPIAVLSGRDLADVTQRVGLPGIWYAGSHGFELTAPD-------GTHH-QNDAAAAAIPVLKQAAAELRQQLGPFPGVVVEHKRFGVAVHYRNAARDRVGEVAAAVRTAEQRH-ALRVTTGREVIELRP 298          
BLAST of CF838536 vs. ExPASy Swiss-Prot
Match: OTSB_MYCMM (Trehalose-phosphate phosphatase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=otsB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.154e-17
Identity = 61/189 (32.28%), Postives = 96/189 (50.79%), Query Frame = 1
Query:  274 RHPSALSKFEEIVNASKGKKI---VMFLDYDGTLAPIVEDPDRAFMTNEMREAVRDVARYFPTAIVTGRCRDKVFSFVKLAGLYYAGSHGMDIEGPSKKRRYKKGNHGVLCQPASEFLPMINEVYQTLLEKTKSIPGAKVENNKFCLSVHFRCVDENSWGTLAEQVRVVLDKYPKLTLTQGRMVLEIVP 831
            RH S L    + +    G  +    +F D+DGTL+ IV+DPD A  T     A++ +A   P AI++GR    V   V L G++YAGSHG ++  P        G H    + A+  +P++ +    L ++  SIPG  VE+ +F ++ H+R    +  G +A  VR    +   L +T GR V+E+ P
Sbjct:  122 RHMSELPDALQALGRPDGLTVPRPAVFFDFDGTLSEIVDDPDAATPTAGAVAALQQLAAQCPVAILSGRDLADVSQRVGLPGIWYAGSHGFELTAPD-------GTHH-QNEAAAAAIPVLEQAAAQLRDRLGSIPGVMVEHKRFGVATHYRNAARDRVGEIAAVVRAA-GQRDGLRVTTGREVIELRP 301          
BLAST of CF838536 vs. ExPASy Swiss-Prot
Match: OTSB_MYCPA (Trehalose-phosphate phosphatase OS=Mycobacterium paratuberculosis GN=otsB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.110e-16
Identity = 54/169 (31.95%), Postives = 90/169 (53.25%), Query Frame = 1
Query:  325 GKKIVMFLDYDGTLAPIVEDPDRAFMTNEMREAVRDVARYFPTAIVTGRCRDKVFSFVKLAGLYYAGSHGMDIEGPSKKRRYKKGNHGVLCQPASEFLPMINEVYQTLLEKTKSIPGAKVENNKFCLSVHFRCVDENSWGTLAEQVRVVLDKYPKLTLTQGRMVLEIVP 831
            G+   +F D+DGTL+ IV+DPD A        A+  +A   P A+++GR    V   V + G++YAGSHG ++  P        G+H      A+  +P++ +    L ++  +IPG  VE+ +F ++VH+R    +  G +A  VR    ++  L +T GR V+E+ P
Sbjct:  139 GRHPAVFFDFDGTLSDIVDDPDAARPVAGATAALTRLAARCPVAVLSGRDLADVTKRVGVLGIWYAGSHGFELTAPD-------GSHH-QNDDAAAAIPVLAQAAGRLRDELGAIPGVVVEHKRFGVAVHYRNAARDRVGEVAAAVRAA-GRHDALRVTTGREVIELRP 298          
BLAST of CF838536 vs. ExPASy Swiss-Prot
Match: OTSB_MYCA1 (Trehalose-phosphate phosphatase OS=Mycobacterium avium (strain 104) GN=otsB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.110e-16
Identity = 54/169 (31.95%), Postives = 90/169 (53.25%), Query Frame = 1
Query:  325 GKKIVMFLDYDGTLAPIVEDPDRAFMTNEMREAVRDVARYFPTAIVTGRCRDKVFSFVKLAGLYYAGSHGMDIEGPSKKRRYKKGNHGVLCQPASEFLPMINEVYQTLLEKTKSIPGAKVENNKFCLSVHFRCVDENSWGTLAEQVRVVLDKYPKLTLTQGRMVLEIVP 831
            G+   +F D+DGTL+ IV+DPD A        A+  +A   P A+++GR    V   V + G++YAGSHG ++  P        G+H      A+  +P++ +    L ++  +IPG  VE+ +F ++VH+R    +  G +A  VR    ++  L +T GR V+E+ P
Sbjct:  139 GRHPAVFFDFDGTLSDIVDDPDAARPVAGATAALTRLAARCPVAVLSGRDLADVTKRVGVPGIWYAGSHGFELTAPD-------GSHH-QNDDAAAAIPVLAQAAGRLSDELGTIPGVVVEHKRFGVAVHYRNAARDRVGEVAAAVRAA-GRHDALRVTTGREVIELRP 298          
BLAST of CF838536 vs. ExPASy Swiss-Prot
Match: OTSB_MYCLE (Trehalose-phosphate phosphatase OS=Mycobacterium leprae GN=otsB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.182e-15
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  340 MFLDYDGTLAPIVEDPDRAFMTNEMREAVRDVARYFPTAIVTGRCRDKVFSFVKLAGLYYAGSHGMDIEGPSKKRRYKKGNHGVLCQPASEFLPMINEVYQTLLEKTKSIPGAKVENNKFCLSVHFRCVDENSWGTLAEQVRVVLDKYPKLTLTQGRMVLEIVP 831
            +F D+DGTL+ IV+DPD A       EA++ +A + P AI++GR    V   + + G++Y+GSHG +   P        G H      A   +P++ +    L ++   IPG  VE+ +F ++VH+R V  +    +A  VR    +   L +T GR V+E+ P
Sbjct:  178 VFFDFDGTLSDIVDDPDSARPVPGATEALQKLATHCPVAILSGRDLADVIKRIGVPGIWYSGSHGFESTAPD-------GTHH-QNDAAEATIPILEQAATQLRDQLGPIPGVMVEHKRFGVAVHYRNVARDRVNEVAVAVRTA-GQRNALRVTTGREVIELRP 332          
The following BLAST results are available for this feature:
BLAST of CF838536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
Y2006_MYCTU5.126e-1933.51Uncharacterized glycosyl hydrolase Rv2006/MT2062 O... [more]
OTSB_MYCUA5.668e-1832.80Trehalose-phosphate phosphatase OS=Mycobacterium u... [more]
OTSB_MYCTU1.263e-1733.54Trehalose-phosphate phosphatase OS=Mycobacterium t... [more]
OTSB_MYCTA1.263e-1733.54Trehalose-phosphate phosphatase OS=Mycobacterium t... [more]
OTSB_MYCBP1.263e-1733.54Trehalose-phosphate phosphatase OS=Mycobacterium b... [more]
OTSB_MYCBO1.263e-1733.54Trehalose-phosphate phosphatase OS=Mycobacterium b... [more]
OTSB_MYCMM2.154e-1732.28Trehalose-phosphate phosphatase OS=Mycobacterium m... [more]
OTSB_MYCPA3.110e-1631.95Trehalose-phosphate phosphatase OS=Mycobacterium p... [more]
OTSB_MYCA13.110e-1631.95Trehalose-phosphate phosphatase OS=Mycobacterium a... [more]
OTSB_MYCLE1.182e-1532.32Trehalose-phosphate phosphatase OS=Mycobacterium l... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06N22_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838536 ID=CF838536; Name=CF838536; organism=Citrus sinensis; type=EST; length=838bp
CGGAAATCCAGTAATATCGGGTTGAAGATCACAGTCACCTTAACCAACTC
CACTCTGTTTTCGGGGGCCGATTCAAAGGCCCTGCCTGCTCCCGGCGGTG
GCTTCATCACCATTTCTCGGAAGAATATCCTTAGAAAGCCTACTGACACT
ACTGATCAAGGAGGCAACAAAATAAATGCATGGGTTAATTCATTGCGAGC
TTCTTCTCCTACTCGTCTGAAATCCTCTATTGCTTTTTCACCCCAAACTG
AAGAGCAAACTTCTTGGATTGCTCGTCATCCCTCAGCTTTGAGCAAGTTT
GAAGAGATAGTGAATGCTTCAAAAGGGAAAAAGATTGTTATGTTCCTCGA
TTATGATGGCACCTTGGCGCCTATAGTGGAAGACCCAGATCGAGCTTTCA
TGACCAACGAGATGAGAGAAGCTGTAAGGGACGTCGCTAGATATTTTCCC
ACAGCTATAGTGACTGGAAGGTGCAGAGACAAGGTTTTTAGCTTTGTAAA
GCTAGCGGGGCTTTACTACGCTGGAAGCCACGGCATGGACATCGAGGGGC
CTTCCAAAAAGCGTCGATACAAGAAAGGTAATCACGGGGTTCTGTGCCAG
CCCGCGAGTGAATTTCTACCGATGATTAATGAGGTGTACCAGACATTGTT
AGAGAAAACAAAATCAATTCCGGGGGCTAAAGTTGAAAACAACAAGTTCT
GTCTCTCCGTACACTTCCGTTGCGTTGATGAAAACAGCTGGGGTACATTA
GCCGAGCAAGTAAGAGTAGTACTTGATAAGTATCCAAAACTTACACTAAC
TCAAGGCAGAATGGTGTTAGAAATCGTCCCACTATTAA
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