CF838538

Overview
NameCF838538
Unique NameCF838538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838538_ssr138 microsatellite CF838538_ssr138:138..149. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8790 contig Csv1_Contig8790:556..1332. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838538 vs. ExPASy Swiss-Prot
Match: YJ72_SCHPO (Uncharacterized protein C757.02c OS=Schizosaccharomyces pombe GN=SPCC757.02c PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.076e-16
Identity = 58/230 (25.22%), Postives = 97/230 (42.17%), Query Frame = -3
Query:  161 WSIHRPFGIFGFSPYSLMNIIATLCMYAAICKHEGIPLLFPGTKETWEGFSEYSDADLIAEQQIWAAVDANARNEAFNCTNGDVFKWKHLWKALAEQFEIE--------NYGFGDE------------------------KDSERMRLGEFMKGK--ESVWEEIVRENQLQPTKLNEVAVWSYADMGLNIGAGYLVSMNKSKEHGFLGFRNSKNSFVTWIGRLKSHRIVP 748
            ++I  P  I G S  S MN   T+ +YA +C+    P  FPG ++ + GF + S + LIA+ Q+W    A    E FN  NGD+  W   W  +AE F +E        ++    E                        K   ++ L +++K K  +  W  I    +L    L EV  W++ D         + SM+K+++ G+  + ++ + F      LK  + +P
Sbjct:  175 YTIAMPNDICGVSKGSYMNEAFTIALYALVCRELHEPFRFPGNEKFYLGFDDISYSKLIADFQLWMTFKAECSEEKFNIVNGDIHSWSRTWPKIAEYFGVEVPKNQFATDFTLSTEVTLSTPSPINLYEKELGIKHTPNSKIINQISLQQWVKQKKVQDAWRTIAEREKLNAHAL-EVGTWAFCDFLFGRTYNVISSMSKARKLGYTDYYDTFDGFKETFDELKKQKQIP 403          
The following BLAST results are available for this feature:
BLAST of CF838538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YJ72_SCHPO2.076e-1625.22Uncharacterized protein C757.02c OS=Schizosaccharo... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06N24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838538 ID=CF838538; Name=CF838538; organism=Citrus sinensis; type=EST; length=777bp
TTTTTTTTTTTTCTTTCCCCAGAAACGACACTTTTCATTGATTGGAAAGC
AAAGAACAAACGAAAGCTGCTTTTCTTCCAGCCAAACAATCTCAATTTAA
ACTATTAATTGGAAGTTTTAACTAAGGCACCAAATTAAAATAAATAAATA
AAATTACTTAAGGCACAATCCTGTGACTTTTTAGCCTACCAATCCAAGTG
ACGAAGGAATTCTTAGAATTCCTGAAACCCAAGAACCCGTGCTCCTTACT
CTTGTTCATGCTAACTAAATAACCCGCACCAATATTCAACCCCATATCTG
CATATGACCAAACAGCAACCTCATTCAATTTCGTTGGCTGAAGCTGATTC
TCTCTCACAATCTCCTCCCACACACTTTCTTTACCTTTCATAAATTCCCC
CAATCTCATCCTCTCACTATCCTTTTCATCTCCAAACCCATAATTCTCAA
TCTCAAACTGCTCAGCCAACGCTTTCCATAAATGCTTCCACTTAAAAACA
TCTCCATTGGTACAATTGAAAGCTTCGTTTCTTGCATTAGCATCAACTGC
CGCCCAAATTTGCTGCTCCGCAATCAAATCTGCATCCGAATATTCTGAGA
AGCCTTCCCAAGTTTCTTTCGTCCCAGGAAATAGTAAAGGAATGCCTTCA
TGTTTACAGATAGCAGCGTACATGCAGAGAGTGGCTATAATATTCATCAA
ACTATAAGGTGAAAACCCAAATATTCCGAAAGGTCGATGTATGGACCAAG
TCAGGCCCTCTCTTTTCTCAACTTCTT
back to top