CF838540

Overview
NameCF838540
Unique NameCF838540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838540_ssr790 microsatellite CF838540_ssr790:790..801. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12029 contig Csv1_Contig12029:71..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838540 vs. ExPASy Swiss-Prot
Match: F10AL_ARATH (FAM10 family protein At4g22670 OS=Arabidopsis thaliana GN=At4g22670 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.457e-63
Identity = 137/240 (57.08%), Postives = 156/240 (65.00%), Query Frame = 2
Query:   56 MDAAKVKELKQFIDQCKSNPSVLADPSLSFFRDYLESLHAKVPPDAYKEGK-SEPRA----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNP-SAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPHALRI 757
            MD+ K+ ELK FIDQCKS+PS+L  PSLSFFRDYLESL AK+P   ++E K ++PR+                                     GD VE DNDPPQKMGDSS EVTD                +SEG  DEAIE  T AI LNP SAIMY  RASVYIK+KKPNAAIRDA AALEINPDSAKGYK+RGMA AMLG W EA  DLH+AS ID+DEEI+AVLKKVEP+A ++
Sbjct:    1 MDSTKLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPTGVHEEDKDTKPRSFVVEESDDDMDETEEVKPKVEEEEEEDEIVESDVELEGDTVEPDNDPPQKMGDSSVEVTDENREAAQEAKGKAMEALSEGNFDEAIEHLTRAITLNPTSAIMYGNRASVYIKLKKPNAAIRDANAALEINPDSAKGYKSRGMARAMLGEWAEAAKDLHLASTIDYDEEISAVLKKVEPNAHKL 240          
BLAST of CF838540 vs. ExPASy Swiss-Prot
Match: F10A1_HUMAN (Hsc70-interacting protein OS=Homo sapiens GN=ST13 PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 3.606e-46
Identity = 100/235 (42.55%), Postives = 140/235 (59.57%), Query Frame = 2
Query:   56 MDAAKVKELKQFIDQCKSNPSVLADPSLSFFRDYLESLHAKVPPDAYKEGKSEPRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPHALRI 757
            MD  KV EL+ F+  CK +PSVL    + F R+++ES+  KVPP A ++ KSE                                      ++E D D PQ+MGD +AE+T+                +++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A+EINPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+LK+V+P A +I
Sbjct:    1 MDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPP-ATQKAKSEENTKEEKPDSKKVEEDLKADEPSSEESDLEIDKEG---VIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKI 231          
BLAST of CF838540 vs. ExPASy Swiss-Prot
Match: F10A1_PONAB (Hsc70-interacting protein OS=Pongo abelii GN=ST13 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.709e-46
Identity = 100/235 (42.55%), Postives = 140/235 (59.57%), Query Frame = 2
Query:   56 MDAAKVKELKQFIDQCKSNPSVLADPSLSFFRDYLESLHAKVPPDAYKEGKSEPRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPHALRI 757
            MD  KV EL+ F+  CK +PSVL    + F R+++ES+  KVPP A ++ KSE                                      ++E D D PQ+MGD +AE+T+                +++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A+EINPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+LK+V+P A +I
Sbjct:    1 MDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPP-ATQKAKSEENTKEEKPDSKKVEEDLKADEPSSEESDLEIDKEG---VIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPKAQKI 231          
BLAST of CF838540 vs. ExPASy Swiss-Prot
Match: F10A1_MOUSE (Hsc70-interacting protein OS=Mus musculus GN=St13 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.370e-45
Identity = 98/235 (41.70%), Postives = 139/235 (59.15%), Query Frame = 2
Query:   56 MDAAKVKELKQFIDQCKSNPSVLADPSLSFFRDYLESLHAKVPPDAYKEGKSEPRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPHALRI 757
            MD  KV EL+ F+  C+ +PSVL    + F R+++ES+  KVPP  +K  KSE                                      ++E D D PQ+MGD +AE+T+                +++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A+EINPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+L++V+P A +I
Sbjct:    1 MDPRKVSELRAFVKMCRQDPSVLHTEEMRFLREWVESMGGKVPPATHK-AKSEENTKEEKRDKTTEENIKTEELSSEESDLEIDNEG----VIEPDTDAPQEMGDENAEITEEMMDEANEKKGAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLREVQPRAQKI 230          
BLAST of CF838540 vs. ExPASy Swiss-Prot
Match: F10A1_RAT (Hsc70-interacting protein OS=Rattus norvegicus GN=St13 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.053e-45
Identity = 98/235 (41.70%), Postives = 139/235 (59.15%), Query Frame = 2
Query:   56 MDAAKVKELKQFIDQCKSNPSVLADPSLSFFRDYLESLHAKVPPDAYKEGKSEPRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPHALRI 757
            MD  KV EL+ F+  C+ +PSVL    + F R+++ES+  KVPP  +K  KSE                                      ++EAD D PQ+MGD +AE+T+                +++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A+EINPDSA+ YK RG AH +LGHWEEA  DL +A K+D+DE+ +A+L++V+P A +I
Sbjct:    1 MDPRKVSELRAFVKMCRQDPSVLHTEEMRFLREWVESMGGKVPPATHK-AKSEENTKEEKRDKTTEDNIKTEEPSSEESDLEIDNEG----VIEADTDAPQEMGDENAEITEAMMDEANEKKGAAIDALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAARDLALACKLDYDEDASAMLREVQPRAQKI 230          
BLAST of CF838540 vs. ExPASy Swiss-Prot
Match: F10A5_HUMAN (Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.987e-45
Identity = 98/235 (41.70%), Postives = 138/235 (58.72%), Query Frame = 2
Query:   56 MDAAKVKELKQFIDQCKSNPSVLADPSLSFFRDYLESLHAKVPPDAYKEGKSEPRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPHALRI 757
            MD  KV EL+ F+  CK +PSVL    + F R+++ES+  KVPP A ++ KSE                                      ++E D D PQ+MGD + E+T+                +++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAI+D   A+EINPDSA+ YK RG AH +LGHWEEA HDL  A K+D+DE+ +A+LK+V+P A +I
Sbjct:    1 MDPCKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPP-ATQKAKSEENTKEEKPDSKKVEEDLKADEPSTEESDLEIDKEG---VIEPDTDAPQEMGDENVEITEEMMDQANDKKVAAIEVLNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIQDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAFACKLDYDEDASAMLKEVQPRAQKI 231          
BLAST of CF838540 vs. ExPASy Swiss-Prot
Match: F10A1_CHICK (Hsc70-interacting protein OS=Gallus gallus GN=ST13 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.979e-44
Identity = 98/242 (40.50%), Postives = 138/242 (57.02%), Query Frame = 2
Query:   56 MDAAKVKELKQFIDQCKSNPSVLADPSLSFFRDYLESLHAKVPP-------DAYKEGKSEPRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPHALRI 757
            MD+ K+ EL+ F+  CK NP +L    L F R+++ES+   +PP       D   +GK+E +                                    ++E DND PQ+MGD + EVT+                +SEG L +A+ L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A++INPDSA+ YK RG AH +LGHWEEA HDL +A K+D+DE+ +A+LK+V+P A +I
Sbjct:    1 MDSRKLGELRAFVRLCKQNPGLLHTEELGFLREWVESMGGTIPPAPASTSTDETSKGKAEEQPEEPVKSPEPESEESDLEIDNEG-------------VIEPDNDDPQEMGDENVEVTEEMMDQANEKKMEAINALSEGDLQKAVNLFTDAIKLNPCLAILYAKRASVFVKLQKPNAAIRDCDRAIKINPDSAQTYKWRGKAHRLLGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKI 229          
BLAST of CF838540 vs. ExPASy Swiss-Prot
Match: F10A4_HUMAN (Protein FAM10A4 OS=Homo sapiens GN=FAM10A4 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.313e-43
Identity = 95/235 (40.43%), Postives = 135/235 (57.45%), Query Frame = 2
Query:   56 MDAAKVKELKQFIDQCKSNPSVLADPSLSFFRDYLESLHAKVPPDAYKEGKSEPRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIMLNPS-AIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVEPHALRI 757
            MD  KV EL+ F+  CK +PS+L    + F R+++ES+       A ++ KSE                                      ++E D D PQ+MGD +AE+T+                +++G+L +AI+L T+AI LNP  AI+YA RASV++K++KPNAAIRD   A+EINPDSA+ YK RG AH +LGHWEEA HDL +A K D+DE+ +A+LK+V+P A +I
Sbjct:    1 MDPRKVNELRAFVKMCKKDPSILHTQEMRFLREWVESMGGT----ATQKAKSEENTKEEKPDSKVEEDLKADEPSSEESDLEIDKEG----VIEPDTDAPQEMGDENAEITEEVMDQANDKKVAAIEALNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKRRGKAHRLLGHWEEAAHDLALACKFDYDEDASAMLKEVQPRAQKI 227          
BLAST of CF838540 vs. ExPASy Swiss-Prot
Match: HRP_PLABE (58 kDa phosphoprotein OS=Plasmodium berghei PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.274e-24
Identity = 74/250 (29.60%), Postives = 112/250 (44.80%), Query Frame = 2
Query:   56 MDAAKVKELKQFIDQCKSNPSVLADPSLSFFRDYLESLHAKVPPD--AYKEGKSEPRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDIVEADNDPPQKMGDSSAEVTDXXXXXXXXXXXXXXXXISEGKLDEAIELSTEAIML--------------------NPSAIMYATRASVYIKMKKPNAAIRDATAALEINPDSAKGYKTRGMAHAMLGHWEEAVHDLHVASKIDFDEEIAAVLKKVE 739
            MD  K+++LK+F+  C+ NPS+L  P LSFF+D++ES   K+  D   Y++ KSE                                        E ++D P+K+     E+                  +SE +++E  +L  EA+ L                    NPSA++Y  RAS+ + +K+P A IRD T AL +N DSA  YK R  A+  LG WE A  D+    KID+DE +  + K ++
Sbjct:    1 MDIEKIEDLKKFVASCEENPSILLKPELSFFKDFIESFGGKIKKDKMGYEKMKSEDSTEEKSDEEEEDEEEEEE---------------------EEEDDDPEKL-----ELIKEEAVECPPLAPIIEGELSEEQIEEICKLKEEAVDLVENKKYEEALEKYNKIISFGNPSAMIYTKRASILLNLKRPKACIRDCTEALNLNVDSANAYKIRAKAYRYLGKWEFAHADMEQGQKIDYDENLWDMQKLIQ 224          
The following BLAST results are available for this feature:
BLAST of CF838540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
F10AL_ARATH1.457e-6357.08FAM10 family protein At4g22670 OS=Arabidopsis thal... [more]
F10A1_HUMAN3.606e-4642.55Hsc70-interacting protein OS=Homo sapiens GN=ST13 ... [more]
F10A1_PONAB4.709e-4642.55Hsc70-interacting protein OS=Pongo abelii GN=ST13 ... [more]
F10A1_MOUSE1.370e-4541.70Hsc70-interacting protein OS=Mus musculus GN=St13 ... [more]
F10A1_RAT3.053e-4541.70Hsc70-interacting protein OS=Rattus norvegicus GN=... [more]
F10A5_HUMAN3.987e-4541.70Protein FAM10A5 OS=Homo sapiens GN=FAM10A5 PE=1 SV... [more]
F10A1_CHICK1.979e-4440.50Hsc70-interacting protein OS=Gallus gallus GN=ST13... [more]
F10A4_HUMAN8.313e-4340.43Protein FAM10A4 OS=Homo sapiens GN=FAM10A4 PE=1 SV... [more]
HRP_PLABE2.274e-2429.6058 kDa phosphoprotein OS=Plasmodium berghei PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06O02_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838540 ID=CF838540; Name=CF838540; organism=Citrus sinensis; type=EST; length=818bp
CAATTACTCCGTCATCTTCGAGAAGCTAAGAACCCTTGAACGAAGGGAGA
CGACGATGGACGCAGCAAAAGTGAAAGAACTGAAACAGTTCATCGATCAG
TGCAAATCCAACCCTTCCGTTCTCGCCGACCCCTCCCTCTCCTTCTTCCG
CGACTATCTCGAAAGTCTCCATGCGAAAGTGCCTCCCGATGCGTACAAAG
AAGGCAAATCCGAACCGAGGGCCTCTGTGGTGGAGGAGAGCGAAGAGGAA
GAACAAAGGGTAGAAGTAGAAGAAAAAGAGGAAGAAGAGGATGAAATAGT
CGAGTCCGATATTGAGCTTGAAGGAGATATTGTGGAGGCTGATAATGATC
CTCCTCAGAAGATGGGAGACAGTTCGGCAGAAGTTACTGATGAGAAACGC
GAAGCGGCTGCGGAGGCAAAGGCCAAGGCCATGGAAGCCATCTCTGAAGG
AAAGTTGGACGAGGCAATTGAGCTTTCGACTGAGGCTATTATGCTGAATC
CATCAGCCATTATGTATGCAACTAGAGCCAGTGTATACATCAAAATGAAG
AAGCCTAATGCTGCCATCCGGGATGCCACTGCAGCTTTAGAGATTAACCC
AGATTCTGCTAAGGGCTACAAGACCCGTGGCATGGCACATGCAATGCTAG
GTCACTGGGAGGAGGCTGTGCATGATCTTCATGTTGCTTCGAAGATAGAT
TTTGATGAAGAAATAGCTGCTGTACTTAAAAAGGTTGAACCCCATGCACT
GAGGATTGAAGAACACCGTAGGAAGTATGATAGACTGCGGAGAGAGAGAG
AAGAGAGAAAGGTTGAGC
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