CF838546

Overview
NameCF838546
Unique NameCF838546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1911 contig Csv1_Contig1911:564..1350. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER56_ARATH (Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.730e-50
Identity = 103/185 (55.68%), Postives = 126/185 (68.11%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQD--KFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            +V TGRRDG V+   EA L LPSPF N S L   F  KGL  KDLVVLSGGHTIG  HC   +NRLYNFTG GD DP+LD  YA  L+ KCK   DTTT  E+DPGSF+ FD  Y+ ++ + +GLFQSDAALL N+  ++ V++  N D   FF +F  SM +MG + VLTG  GE+RKKC ++N
Sbjct:  146 EVETGRRDGLVTNITEALLNLPSPFNNISSLITQFQSKGLDKKDLVVLSGGHTIGNGHCPQITNRLYNFTGKGDSDPNLDTEYAVKLRGKCKP-TDTTTALEMDPGSFKTFDESYFKLVSQRRGLFQSDAALLDNQETKSYVLKSLNSDGSTFFKDFGVSMVKMGRIGVLTGQVGEVRKKCRMVN 329          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER39_ARATH (Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.115e-48
Identity = 100/185 (54.05%), Postives = 129/185 (69.73%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKT-KCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELR--NQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            V TGRRDG +S  AEA   +P PF NF+ L   F ++GL VKDLV+LSG HTIGVSHC+ FSNRL+NFTG GDQDPSLD  YA  LK+ +C S+AD TT  E+DPGS   FD  YY ++++ +GLF+SDAAL  N  A   V      ++ +FF EF+ SM++MG + V TG+ GEIR+ C+ +N
Sbjct:  142 VPTGRRDGRISNFAEAMNNIPPPFGNFTTLITLFGNQGLDVKDLVLLSGAHTIGVSHCSSFSNRLFNFTGVGDQDPSLDSEYADNLKSRRCLSIADNTTKVEMDPGSRNTFDLSYYRLVLKRRGLFESDAALTMNPAALAQVKRFAGGSEQEFFAEFSNSMEKMGRIGVKTGSDGEIRRTCAFVN 326          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER3_ARATH (Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.711e-48
Identity = 98/186 (52.69%), Postives = 133/186 (71.51%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKT-KCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMEL--RNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            V TGRRDG +S AAEA   +P P +N + L+  F ++GL +KDLV+LSG HTIGVSHC+ F+NRLYNFTG G QDP+LD  YAA LK+ KC SL D  T  E+DPGS + FD  YY ++++ +GLFQSD+AL TN    + +  +   +   FF+EFA+SM++MG +NV TG+ G +R++CSV N+
Sbjct:  141 VPTGRRDGRISNAAEALANIPPPTSNITNLQTLFANQGLDLKDLVLLSGAHTIGVSHCSSFTNRLYNFTGRGGQDPALDSEYAANLKSRKCPSLNDNKTIVEMDPGSRKTFDLSYYQLVLKRRGLFQSDSALTTNPTTLSNINRILTGSVGSFFSEFAKSMEKMGRINVKTGSAGVVRRQCSVANS 326          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER27_ARATH (Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.153e-48
Identity = 101/185 (54.59%), Postives = 122/185 (65.95%), Query Frame = 1
Query:   13 QVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVME--LRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            +V TGRRDG VS   E +L  PSPF N ++L  +F  KGL  KDLV+LSGGHTIG+ HC   +NRLYNFTG GD DPSLD  YAA L+ KCK   DTTT  E+DPGSF+ FD  Y+ ++ + +GLFQSDAALL N   R  V++    +   FF +F  SM +MG   VLTG  GEIRK C   N
Sbjct:  140 EVETGRRDGRVSNINEVNL--PSPFDNITKLISDFRSKGLNEKDLVILSGGHTIGMGHCPLLTNRLYNFTGKGDSDPSLDSEYAAKLRKKCKP-TDTTTALEMDPGSFKTFDLSYFTLVAKRRGLFQSDAALLDNSKTRAYVLQQIRTHGSMFFNDFGVSMVKMGRTGVLTGKAGEIRKTCRSAN 321          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER1_ORYSJ (Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PRX74 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.803e-47
Identity = 102/185 (55.14%), Postives = 126/185 (68.11%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTG---NGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRN---QDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            GRRDG VSIA E D L P P ANF+EL + F  K L +KDLVVLS GHTIG SHC  F++RLYNFTG     D DP+L+ +Y A L++KC SL D TT  E+DPGSF+ FD  Y+  + + +GLF SD  LLTN   R  V        +D+FF +FA SM +MG + VLTG+QGEIRKKC+V+N
Sbjct:  143 GRRDGRVSIANETDQL-PPPTANFTELTQMFAAKNLDLKDLVVLSAGHTIGTSHCFSFTDRLYNFTGLDNAHDIDPTLELQYMARLRSKCTSLQDNTTLVEMDPGSFKTFDLGYFKNVAKRRGLFHSDGELLTNGFTRAYVQRHAGGGYKDEFFADFAASMVKMGGVEVLTGSQGEIRKKCNVVN 326          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER30_ARATH (Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.516e-46
Identity = 96/183 (52.46%), Postives = 128/183 (69.95%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLK-TKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRN--QDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSV 555
            V TGRRDG +S   EA   +P P +NF+ L++ F ++GL +KDLV+LSG HTIGVSHC+  + RLYNF+    QDPSLD +YAA LK  KCKSL D +T  E+DPGS R FD  YY ++++ +GLFQSD+AL TN     ++ +L N  + KFF  FA+SM++MG + V TG+ G IR +CSV
Sbjct:  144 VPTGRRDGRISNKTEATNNIPPPTSNFTTLQRLFKNQGLNLKDLVLLSGAHTIGVSHCSSMNTRLYNFSTTVKQDPSLDSQYAANLKANKCKSLNDNSTILEMDPGSSRSFDLSYYRLVLKRRGLFQSDSALTTNSATLKVINDLVNGSEKKFFKAFAKSMEKMGRVKVKTGSAGVIRTRCSV 326          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER1_ARATH (Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.563e-43
Identity = 90/183 (49.18%), Postives = 118/183 (64.48%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFFT----EFAQSMKRMGAMNVLTGTQGEIRKKCSVIN 561
            GRRDG +S   +A L LPSPFA+   LKKNF +KGL  KDLVVLSGGHTIG+S C   ++RLYNFTG GD DPS++P Y   LK KC    D  T+  +DPGS   FD+HY+ ++ + KGLF SD+ LL +   +N V         F+    +F+ SM ++G + +LTG  GEIRK+C+  N
Sbjct:  144 GRRDGRISKLNDALLNLPSPFADIKTLKKNFANKGLNAKDLVVLSGGHTIGISSCALVNSRLYNFTGKGDSDPSMNPSYVRELKRKCPP-TDFRTSLNMDPGSALTFDTHYFKVVAQKKGLFTSDSTLLDDIETKNYVQTQAILPPVFSSFNKDFSDSMVKLGFVQILTGKNGEIRKRCAFPN 325          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER24_ARATH (Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.917e-41
Identity = 97/192 (50.52%), Postives = 123/192 (64.06%), Query Frame = 1
Query:    1 RTCGQVLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKC--KSL-ADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTNKGARNIVMELRNQDKFFTEFAQSMKRMGAMNVLT-GTQ-GEIRKKCSVIN 561
            R    V TGR DG VS+A EA   LPS  ANF+ L+K F +  L V DLV LSG HTIG++HC  F  RL NFTG GD DPSL+P YA+FLK++C  KSL  + +    +DP     FDS Y+  L++NKGLF SDAALLT+  A +I    +N   F  +F +SM +M ++ VLT G Q GEIRK C ++N
Sbjct:  159 RPLWNVFTGRVDGRVSLATEAARDLPSAGANFTTLQKLFAESDLDVVDLVALSGAHTIGIAHCGVFGRRLLNFTGKGDTDPSLNPSYASFLKSECSDKSLRLNPSAVVGMDPTGPLAFDSGYFVSLLKNKGLFTSDAALLTDPSAAHIASVFQNSGAFLAQFGRSMIKMSSIKVLTLGDQGGEIRKNCRLVN 350          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER5_VITVI (Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.335e-37
Identity = 84/185 (45.41%), Postives = 113/185 (61.08%), Query Frame = 1
Query:   16 VLTGRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKC-KSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALLTN-KGARNIVMELRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            V  GRRDG +S+A+EA   LP P     +L + F++KGLT  ++V LSG HTIG SHC+ FSNRLYNF G   QDP+LDP+YAA LKT+C +   +T     ++P S    D  YY  ++ N+GLF SD  LLT+   A  +     N   +  +FA +M +MG + VL G  G+IR  C VIN+
Sbjct:  178 VPAGRRDGRISLASEASTNLPPPTFTVDQLTQFFSNKGLTQDEMVTLSGAHTIGRSHCSSFSNRLYNFNGTSGQDPTLDPQYAASLKTQCPQGSTNTNLVVPMNPSSPSITDVGYYVDVLRNRGLFTSDQTLLTDTTTATQVRQNAGNPFLWKNKFASAMVKMGQLGVLIGEAGQIRANCRVINS 362          
BLAST of CF838546 vs. ExPASy Swiss-Prot
Match: PER14_ARATH (Peroxidase 14 OS=Arabidopsis thaliana GN=PER14 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.502e-35
Identity = 80/182 (43.96%), Postives = 113/182 (62.09%), Query Frame = 1
Query:   25 GRRDGSVSIAAEADLLLPSPFANFSELKKNFNDKGLTVKDLVVLSGGHTIGVSHCTFFSNRLYNFTGNGDQDPSLDPRYAAFLKTKCKSLADTTTTAELDPGSFRKFDSHYYDILIENKGLFQSDAALL-TNKGARNIVME-LRNQDKFFTEFAQSMKRMGAMNVLTGTQGEIRKKCSVINN 564
            GRRD + +  A+ +  LP P   F  +   F+++GL + DLV LSG HTIG S CT F  RLYN +G+G  D +L+  YAA L+ +C         +ELD  S  +FD+ Y+  LIEN GL  SD  L  +N+ +R +V +   +Q++FF +FA+SM +MG ++ LTG+ GEIRKKC  INN
Sbjct:  155 GRRDSATASRAKPNKDLPEPDNLFDTIFLRFSNEGLNLTDLVALSGSHTIGFSRCTSFRQRLYNQSGSGSPDTTLEKSYAAILRQRCPRSGGDQNLSELDINSAGRFDNSYFKNLIENMGLLNSDQVLFSSNEQSRELVKKYAEDQEEFFEQFAESMIKMGKISPLTGSSGEIRKKCRKINN 336          
The following BLAST results are available for this feature:
BLAST of CF838546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER56_ARATH1.730e-5055.68Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=... [more]
PER39_ARATH2.115e-4854.05Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=... [more]
PER3_ARATH4.711e-4852.69Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 ... [more]
PER27_ARATH6.153e-4854.59Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=... [more]
PER1_ORYSJ6.803e-4755.14Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PR... [more]
PER30_ARATH1.516e-4652.46Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=... [more]
PER1_ARATH4.563e-4349.18Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=... [more]
PER24_ARATH1.917e-4150.52Peroxidase 24 OS=Arabidopsis thaliana GN=PER24 PE=... [more]
PER5_VITVI8.335e-3745.41Peroxidase 5 OS=Vitis vinifera GN=GSVIVT0003715900... [more]
PER14_ARATH3.502e-3543.96Peroxidase 14 OS=Arabidopsis thaliana GN=PER14 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06O08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838546 ID=CF838546; Name=CF838546; organism=Citrus sinensis; type=EST; length=787bp
CGGACCTGTGGGCAAGTGCTCACCGGTAGAAGAGATGGCAGTGTGTCCAT
AGCTGCTGAGGCCGATCTGCTGCTTCCTTCACCTTTTGCCAACTTCAGTG
AACTCAAGAAAAATTTTAACGACAAAGGTCTCACTGTCAAAGATCTTGTA
GTCCTTTCAGGTGGCCACACAATCGGAGTTTCGCACTGCACCTTCTTCAG
CAACAGGCTCTACAATTTCACAGGAAATGGAGATCAAGATCCTTCATTGG
ACCCACGATACGCTGCATTCTTAAAAACCAAATGCAAGAGCCTTGCCGAC
ACAACGACTACTGCCGAATTGGACCCGGGGAGTTTTCGAAAATTCGACAG
CCATTACTATGATATTCTTATCGAGAACAAGGGTCTATTCCAATCTGATG
CTGCTCTTTTAACCAATAAGGGAGCAAGAAACATTGTCATGGAGTTGAGA
AACCAAGATAAGTTCTTCACCGAGTTTGCTCAGTCAATGAAGAGAATGGG
AGCTATGAATGTTCTCACTGGCACTCAAGGGGAGATTCGAAAGAAGTGCA
GTGTTATTAATAATCCAGATAGTTTGTTGCATTCATCTATCTGATGTCAA
TGTAATTGCCAATTTAGTCTGCTGCTGGGCTTGTGGGTTTGTTAAGATCT
GTTGATAATTGTACCACGGAATAAATTAAGGATGTGGGTGTGTTTGTGCA
GCTGAAGCCTTAATTTGTATCATTGATAGGCTGTACGTTTATAACTACCA
GCTACCTTTCTTATCGAAATTAAAAAAAAAAAAAAAA
back to top