CF838550

Overview
NameCF838550
Unique NameCF838550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838550_ssr206 microsatellite CF838550_ssr206:206..217. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11109 contig Csv1_Contig11109:105..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX1_MANIN (Alternative oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2)

HSP 1 Score: 364.385 bits (934), Expect = 4.254e-100
Identity = 178/250 (71.20%), Postives = 200/250 (80.00%), Query Frame = 3
Query:   63 MSVMRGLINGGKHSIGYARTVVRC-HPNVWDGDDMPLLGLRMXXXXXXXXXXXXXXXXXXXXXGENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            M+VMRGL+NGG++   Y  T +   HP V +G+ +      M                      +   + S+YWGISRPKITREDGS WPWNCFMPWETYR+DLSIDLKKHHVP TF+DK AYRTVK+LR+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRK + SGGWIKALLEEAENERMHLMTMVELV+PKWYER+LVL VQGVFFN+FFVLY+LSPKLAHR+VGYLEEEAIHSYTEYL
Sbjct:    1 MTVMRGLLNGGRYGNRYIWTAISLRHPEVMEGNGLE--SAVMQWRRMLSNAGGAEAQVKEQKEEKKDAMVSNYWGISRPKITREDGSEWPWNCFMPWETYRSDLSIDLKKHHVPRTFMDKFAYRTVKILRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENERMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTEYL 248          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX2_SOYBN (Alternative oxidase 2, mitochondrial OS=Glycine max GN=AOX2 PE=1 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 3.155e-95
Identity = 162/186 (87.10%), Postives = 175/186 (94.09%), Query Frame = 3
Query:  252 ENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            E  +V SSYWGISRPK+ REDG+ WPWNCFMPWE+YR+++SIDL KHHVP   LDKVAYRTVKLLRIPTDLFF+RRYGCRAMMLETVAAVPGMVGGMLLHL+SLRKFQ SGGWIKALLEEAENERMHLMTMVELVKPKWYER+LVL VQGVFFNAFFVLY+LSPK+AHR+VGYLEEEAIHSYTEYL
Sbjct:   78 EKSVVESSYWGISRPKVVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTVKLLRIPTDLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMHLMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYL 263          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX2_ARATH (Alternative oxidase 2, mitochondrial OS=Arabidopsis thaliana GN=AOX2 PE=1 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 3.056e-90
Identity = 156/192 (81.25%), Postives = 175/192 (91.15%), Query Frame = 3
Query:  249 GENG---IVPSSYWGI--SRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            G+NG   +   SYWGI  ++ KITR+DGS WPWNCFMPWETY+A+LSIDLKKHHVP    DKVAYR VKLLRIPTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHLKS+RKF+HSGGWIKALLEEAENERMHLMTM+ELVKPKWYER+LV+ VQG+FFN+FFV Y++SP+LAHRVVGYLEEEAIHSYTE+L
Sbjct:   92 GQNGGGSVAVPSYWGIETAKMKITRKDGSDWPWNCFMPWETYQANLSIDLKKHHVPKNIADKVAYRIVKLLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAENERMHLMTMMELVKPKWYERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYTEFL 283          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX1A_ARATH (Alternative oxidase 1a, mitochondrial OS=Arabidopsis thaliana GN=AOX1A PE=1 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 7.045e-87
Identity = 149/187 (79.68%), Postives = 168/187 (89.84%), Query Frame = 3
Query:  249 GENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            G+ GI  +SYWG+   KIT+EDGS W WNCF PWETY+AD++IDLKKHHVPTTFLD++AY TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT +E+ KPKWYER LV+TVQGVFFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+L
Sbjct:  100 GDKGI--ASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 284          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX2_TOBAC (Alternative oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2 PE=1 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 1.125e-84
Identity = 144/179 (80.45%), Postives = 157/179 (87.71%), Query Frame = 3
Query:  273 SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            SYWG+   K+T+EDG+ W WNCF PWETY+ADLSIDL KHH PTTFLDK AY TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIKALLEEAENERMHLMT +E+ KP WYER LV  VQGVF NA+FV YLLSPKLAHR+VGYLEEEAIHSYTE+L
Sbjct:   49 SYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKALRYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVFAVQGVFINAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFL 227          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX1_TOBAC (Alternative oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.469e-84
Identity = 143/179 (79.89%), Postives = 157/179 (87.71%), Query Frame = 3
Query:  273 SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            SYWG+   K+T+EDG+ W WNCF PWETY+ADLSIDL KHH PTTFLDK AY TVK LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+F+ SGGWIK LL+EAENERMHLMT +E+ KP WYER LV  VQGVFFNA+FV YLLSPKLAHR+VGYLEEEAIHSYTE+L
Sbjct:  105 SYWGVQPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKSLRYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENERMHLMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEFL 283          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX3_SOYBN (Alternative oxidase 3, mitochondrial OS=Glycine max GN=AOX3 PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.521e-84
Identity = 139/187 (74.33%), Postives = 163/187 (87.17%), Query Frame = 3
Query:  249 GENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            G +  V +SYWGI+RPK+ REDG+ WPWNCFMPW++Y +D+SID+ KHH P +  DKVA+R VK LR+ +D++F+ RYGC AMMLET+AAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKP W+ER+L+ T QGVFFNAFFV YLLSPK AHR VGYLEEEA+ SYT++L
Sbjct:   70 GTSNAVVTSYWGITRPKVRREDGTEWPWNCFMPWDSYHSDVSIDVTKHHTPKSLTDKVAFRAVKFLRVLSDIYFKERYGCHAMMLETIAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPSWHERLLIFTAQGVFFNAFFVFYLLSPKAAHRFVGYLEEEAVISYTQHL 256          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX1_SAUGU (Alternative oxidase, mitochondrial OS=Sauromatum guttatum GN=AOX1 PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.375e-82
Identity = 141/179 (78.77%), Postives = 159/179 (88.83%), Query Frame = 3
Query:  273 SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            SYW +   K+++EDGS W W CF PWETY+ADLSIDL KHHVPTT LDK+A RTVK LR PTD+FFQRRY CRAMMLETVAAVPGMVGG+LLHLKSLR+F+HSGGWI+ALLEEAENERMHLMT +E+ +P+WYER LVL VQGVFFNA+F+ YLLSPK AHRVVGYLEEEAIHSYTE+L
Sbjct:  101 SYWAVPPSKVSKEDGSEWRWTCFRPWETYQADLSIDLHKHHVPTTILDKLALRTVKALRWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEFL 279          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX1_SOYBN (Alternative oxidase 1, mitochondrial OS=Glycine max GN=AOX1 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.345e-82
Identity = 141/179 (78.77%), Postives = 159/179 (88.83%), Query Frame = 3
Query:  273 SYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            SYWGI   KIT++DG+ W WNCF PW TY+ADLSIDL+KH  PTTFLDK+A+ TVK+LR PTD+FFQRRYGCRAMMLETVAAVPGMV GMLLH KSLR+F+HSGGW KALLEEAENERMHLMT +E+ KPKWYER LV+TVQGVFFNA+F+ YLLSPK AHR+ GYLEEEAIHSYTE+L
Sbjct:   73 SYWGIQPSKITKKDGTEWKWNCFSPWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKVLRYPTDVFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTEFL 251          
BLAST of CF838550 vs. ExPASy Swiss-Prot
Match: AOX1B_ARATH (Alternative oxidase 1b, mitochondrial OS=Arabidopsis thaliana GN=AOX1B PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 6.823e-82
Identity = 142/187 (75.94%), Postives = 163/187 (87.17%), Query Frame = 3
Query:  249 GENGIVPSSYWGISRPKITREDGSPWPWNCFMPWETYRADLSIDLKKHHVPTTFLDKVAYRTVKLLRIPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKFQHSGGWIKALLEEAENERMHLMTMVELVKPKWYERMLVLTVQGVFFNAFFVLYLLSPKLAHRVVGYLEEEAIHSYTEYL 809
            GE  IV  SYWG+   KIT+EDG+ W W+CF PWETY++DL+IDLKKHHVP+T  DK+AY TVK LR PTDLFFQRRYGCRAMMLETVAAVPGMVGGML+H KSLR+F+ SGGWIKALLEEAENERMHLMT +E+ KP WYER LV+ VQG+FFNA+F+ YL+SPK AHR+VGYLEEEAIHSYTE+L
Sbjct:   71 GEQLIV--SYWGVKPMKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLAYWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFL 255          
The following BLAST results are available for this feature:
BLAST of CF838550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
AOX1_MANIN4.254e-10071.20Alternative oxidase, mitochondrial OS=Mangifera in... [more]
AOX2_SOYBN3.155e-9587.10Alternative oxidase 2, mitochondrial OS=Glycine ma... [more]
AOX2_ARATH3.056e-9081.25Alternative oxidase 2, mitochondrial OS=Arabidopsi... [more]
AOX1A_ARATH7.045e-8779.68Alternative oxidase 1a, mitochondrial OS=Arabidops... [more]
AOX2_TOBAC1.125e-8480.45Alternative oxidase 2, mitochondrial OS=Nicotiana ... [more]
AOX1_TOBAC1.469e-8479.89Alternative oxidase 1, mitochondrial OS=Nicotiana ... [more]
AOX3_SOYBN9.521e-8474.33Alternative oxidase 3, mitochondrial OS=Glycine ma... [more]
AOX1_SAUGU1.375e-8278.77Alternative oxidase, mitochondrial OS=Sauromatum g... [more]
AOX1_SOYBN2.345e-8278.77Alternative oxidase 1, mitochondrial OS=Glycine ma... [more]
AOX1B_ARATH6.823e-8275.94Alternative oxidase 1b, mitochondrial OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838550 ID=CF838550; Name=CF838550; organism=Citrus sinensis; type=EST; length=809bp
TGAGCAGCGTTTCTGACTGACCGAAGAAACAAAAAACAAAGAAAATGAAT
CAATTACTAGCGATGTCGGTGATGCGAGGGCTGATTAACGGCGGGAAGCA
CAGTATCGGCTACGCAAGGACGGTGGTGAGATGTCATCCGAACGTTTGGG
ACGGAGATGACATGCCGTTATTGGGGTTGAGAATGATGGTGATGATGAGT
AGTTATTCTTCTTCTTCGGAATCGGTGCCTGAGAAAGTGAAGGAGAAAGG
AGAGAACGGAATTGTACCGTCGAGTTATTGGGGTATTTCGAGGCCAAAGA
TCACTAGAGAGGATGGCAGTCCATGGCCTTGGAATTGTTTCATGCCTTGG
GAAACTTATCGGGCAGATTTATCAATTGATTTGAAGAAGCACCATGTGCC
CACAACCTTCCTTGACAAAGTTGCTTACCGGACGGTCAAACTCCTCCGAA
TTCCCACTGATTTGTTTTTTCAGAGACGATATGGATGTCGTGCAATGATG
CTGGAAACAGTGGCGGCTGTACCTGGAATGGTTGGAGGAATGTTGCTACA
CCTCAAGTCTCTGCGTAAGTTCCAGCATAGTGGTGGTTGGATCAAAGCTC
TGCTTGAAGAAGCAGAGAATGAGAGGATGCATCTGATGACCATGGTGGAG
CTTGTGAAGCCCAAATGGTATGAGAGGATGCTTGTTCTGACTGTGCAGGG
TGTCTTTTTCAATGCATTCTTTGTGCTTTATCTACTCTCACCTAAACTGG
CTCATAGAGTTGTTGGCTACTTGGAGGAGGAGGCTATACACTCTTACACT
GAATATCTC
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