CF838557

Overview
NameCF838557
Unique NameCF838557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11227 contig Csv1_Contig11227:117..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838557 vs. ExPASy Swiss-Prot
Match: ARPC3_MOUSE (Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 4.818e-40
Identity = 83/170 (48.82%), Postives = 116/170 (68.24%), Query Frame = 3
Query:  153 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 656
            YHSS +D +  TK  G   LLPL+S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P S++E E+ R YL+Q+R+ET  RL    + P +  P+KWW  F KR+FMN
Sbjct:    4 YHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMN 170          
BLAST of CF838557 vs. ExPASy Swiss-Prot
Match: ARPC3_HUMAN (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 6.293e-40
Identity = 82/170 (48.24%), Postives = 116/170 (68.24%), Query Frame = 3
Query:  153 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 656
            YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct:    4 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170          
BLAST of CF838557 vs. ExPASy Swiss-Prot
Match: ARPC3_BOVIN (Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 6.293e-40
Identity = 82/170 (48.24%), Postives = 116/170 (68.24%), Query Frame = 3
Query:  153 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 656
            YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P +++E E+ R YL+Q+R+ET  RL    + P N  P+KWW  F KR+FMN
Sbjct:    4 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170          
BLAST of CF838557 vs. ExPASy Swiss-Prot
Match: ARPC3_SCHPO (Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe GN=arc3 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.368e-33
Identity = 74/169 (43.79%), Postives = 101/169 (59.76%), Query Frame = 3
Query:  153 YHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAY-RPNGTPNKWWLAFAKRKFMN 656
            YHSSF+    V       +LPLK+  +GPA  +D+ + DI+DE I  FRAN FFRNF+IK  AD+ LIY T +I+  L R+ G     +  + + +L LE   +PG   FP   L+A P S ++AE+ R YL Q R+E + RLLS  Y      P+KWW  F+KR+FMN
Sbjct:    4 YHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEIKGPADRTLIYGTLFISECLGRVNG-LNYRDAERQLNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMN 171          
BLAST of CF838557 vs. ExPASy Swiss-Prot
Match: ARPC3_DICDI (Actin-related protein 2/3 complex subunit 3 OS=Dictyostelium discoideum GN=arcC PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.705e-33
Identity = 72/172 (41.86%), Postives = 102/172 (59.30%), Query Frame = 3
Query:  147 MVYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAYRPN-GTPNKWWLAFAKRKFMN 656
            MVYHS F DE    +  G  P+LPLK+  KGPAP  D +  DI+DEA+  F+AN+ FRNF+++ + D++LIYLT YI   L ++      A+  KA+  +  E+  +PGE  FP  GL  +P ++  A+  R Y  Q+R E   RL    Y  +    NKWW+ F+KRKF+N
Sbjct:    1 MVYHSQFNDESAGFRLVGNVPILPLKTTHKGPAPKGDANSVDIIDEALDLFKANILFRNFEVQGNGDRVLIYLTLYITKCLLKI-APMNKADAEKALFLIAQEQFSIPGESAFPLGGLVTVPNTRDAADTLRQYFTQLRLELGVRLCQRVYAVDPSKANKWWICFSKRKFLN 171          
BLAST of CF838557 vs. ExPASy Swiss-Prot
Match: ARPC3_CAEEL (Probable actin-related protein 2/3 complex subunit 3 OS=Caenorhabditis elegans GN=arx-5 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.731e-33
Identity = 73/172 (42.44%), Postives = 107/172 (62.21%), Query Frame = 3
Query:  153 YHSSFVDEEGVTKACGCPL--LPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEK-VPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIREETSGRLLSVAY-RPNGTPNKWWLAFAKRKFMN 656
            YHS F  E  V       +  LP++++ KGPAP ++QD  DI+DEA+T+F+ N+FFR F+IK  AD+ +IYL FYI   L++L+       G K +  L L   +P+PGE  FP   ++  PQS+ + +  R YL+QIR+E   RL  +A+  P   P+KWWL FA+R+FM+
Sbjct:    4 YHSKFDTELKVLPLGNTNMGKLPIRTNFKGPAPQTNQD--DIIDEALTYFKPNIFFREFEIKGPADRTMIYLIFYITECLRKLQKSPNKIAGQKDLHALALSHLLPIPGENGFPLNSMYKAPQSKPDEDEMRAYLQQIRQEIGARLCDLAFPDPQDRPSKWWLCFARRRFMD 173          
BLAST of CF838557 vs. ExPASy Swiss-Prot
Match: ARPC3_YEAST (Actin-related protein 2/3 complex subunit 3 OS=Saccharomyces cerevisiae GN=ARC18 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.480e-28
Identity = 68/173 (39.31%), Postives = 101/173 (58.38%), Query Frame = 3
Query:  153 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP-QSQKEAELFRNYLKQIREETSGRLLSVAYRPNGT---PNKWWLAFAKRKFMN 656
            YHS+F  +    +  G   LLPL +  +GPA  S+ D  DI+DE +  FRAN FF+NF+IKS AD++LIY   +IN  L  L+   +  E  K + N+ L+   +PG P FP   ++ +P Q     +L + Y++Q R+E + RLL   Y    +   P+K+WLAF +R+FMN
Sbjct:    4 YHSTFPVDPNTDRMVGNFALLPLNTKFRGPAYPSNSDY-DIIDECLDLFRANSFFKNFEIKSPADRVLIYGILFINDCLAHLKITTSFNEAVKVLTNVALDNFTLPGTPGFPLNNVYQVPVQDHNSMDLLKTYIQQFRQELAMRLLERVYSSTDSKEYPSKFWLAFTRRRFMN 175          
BLAST of CF838557 vs. ExPASy Swiss-Prot
Match: ARPC3_ENTHI (Probable actin-related protein 2/3 complex subunit 3 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.845e-13
Identity = 48/121 (39.67%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  141 REMVYHSSFVDEEGVTKACGCPLLPLKSHIK-GPAPASDQDRTDIVDEAITFFRANVFFRNFDIK-SSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGLEKVPVPGEPNFPFPGL 497
            R   YHS  +D++ V KA   PL+  K+ +K  P      D  DIVDEAIT+++ANVF++N D+    ADKLL YL FY+   L    G RT  +  K   +L +E   +PG+  F   G+
Sbjct:    5 RSGAYHSE-LDKDIVQKAGNFPLMQFKTKVKVNPKFLLKGDDMDIVDEAITYYKANVFYKNLDMSICEADKLLAYLMFYLQSLLLTFTG-RTKVDCDKMAFSLAIENFGLPGDGKFCLGGI 123          
The following BLAST results are available for this feature:
BLAST of CF838557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ARPC3_MOUSE4.818e-4048.82Actin-related protein 2/3 complex subunit 3 OS=Mus... [more]
ARPC3_HUMAN6.293e-4048.24Actin-related protein 2/3 complex subunit 3 OS=Hom... [more]
ARPC3_BOVIN6.293e-4048.24Actin-related protein 2/3 complex subunit 3 OS=Bos... [more]
ARPC3_SCHPO4.368e-3343.79Actin-related protein 2/3 complex subunit 3 OS=Sch... [more]
ARPC3_DICDI5.705e-3341.86Actin-related protein 2/3 complex subunit 3 OS=Dic... [more]
ARPC3_CAEEL9.731e-3342.44Probable actin-related protein 2/3 complex subunit... [more]
ARPC3_YEAST2.480e-2839.31Actin-related protein 2/3 complex subunit 3 OS=Sac... [more]
ARPC3_ENTHI3.845e-1339.67Probable actin-related protein 2/3 complex subunit... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06O21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838557 ID=CF838557; Name=CF838557; organism=Citrus sinensis; type=EST; length=797bp
CGAATGTGACACCTTCCAATCTTCGGATCCAACCAACAGAGAAAACATAT
CATTTTTCTTTTGCCGAGAAATTGATACTTGCAGGAAAATTAGGGTTTTG
CAAATTGGGGCGAAAACAGATTCTTTTTAGCTCCAGTCATCGAGAAATGG
TTTATCATTCGAGTTTTGTTGATGAGGAAGGAGTTACTAAAGCTTGTGGT
TGCCCTTTACTTCCTTTAAAAAGCCATATAAAGGGTCCTGCCCCTGCTTC
TGATCAAGATAGAACTGATATTGTTGATGAGGCAATCACGTTCTTCAGGG
CCAATGTGTTCTTTAGAAACTTTGATATTAAGAGCTCGGCTGATAAGCTG
CTAATATATTTGACATTCTACATAAATGTGGCTTTGAAAAGACTTGAGGG
TCGTAGAACTTTGGCTGAGGGAACCAAGGCAATCATTAACTTGGGCTTGG
AAAAGGTTCCTGTGCCAGGAGAGCCTAATTTTCCTTTTCCAGGTCTCTTT
GCTCTTCCTCAATCTCAAAAGGAAGCAGAGCTATTCAGGAATTATCTGAA
GCAGATAAGAGAGGAAACAAGTGGGAGACTGTTGAGTGTTGCATATAGAC
CTAACGGCACACCAAATAAATGGTGGTTGGCATTTGCCAAGAGGAAATTC
ATGAACATCATTGTTCCTTGAATACAGTTTGTTGTGCACCCATCCAACTT
GTAGCTTCTGAAATTCTTATATATGCTCTAAAAAATATGATTCCTTTTCA
TTGACAGTAATAAAAATTTGACTTGAGGCTTAAAAAAAAAAAAAAAA
back to top