CF838697

Overview
NameCF838697
Unique NameCF838697
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10990 contig Csv1_Contig10990:34..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF838697 vs. ExPASy Swiss-Prot
Match: KTAP2_HUMAN (Keratinocyte-associated protein 2 OS=Homo sapiens GN=KRTCAP2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = -1 
Query:  219 MAGSGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXASTVHRVCITTCFLFSAGLLYEVNKLSGMM 548
            + G+G+S+  S L+ +++ +  QMY  +LASTE  TI GG + S +F+ SLT   N +      G +   +             +  +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:   28 VVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 141
[Close]
BLAST of CF838697 vs. ExPASy Swiss-Prot
Match: KTAP2_BOVIN (Keratinocyte-associated protein 2 OS=Bos taurus GN=KRTCAP2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = -1 
Query:  219 MAGSGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXASTVHRVCITTCFLFSAGLLYEVNKLSGMM 548
            + G+G+S+  S L+ +++ +  QMY  +LASTE  TI GG + S +F+ SLT   N +      G +   +             +  +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:    2 VVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 115
The following BLAST results are available for this feature:
BLAST of CF838697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KTAP2_HUMAN7.856e-1134.21Keratinocyte-associated protein 2 OS=Homo sapiens ... [more]
KTAP2_BOVIN7.856e-1134.21Keratinocyte-associated protein 2 OS=Bos taurus GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06F09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838697 ID=CF838697; Name=CF838697; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTGACCATTAAGGCATTGTAAATATGTTGGACACAAAAATGTATC
CCCCAGACAATCACTGTCAGACAAACTATAAAGTATCAGTAATTTTTCGT
TTTTGATAGTTATCCGCTACACTAAAAAATGATTATGGATACAAAGATAA
GATGATAACCTCTTGTAATTTATCCGGCATCATCAATGCCTTTTTGTTTT
GGATTCACTTCTGGCAATCATCATCCCTGAAAGCTTGTTGACCTCGTACA
GCAGTCCAGCTGAGAACAAGAAACATGTTGTAATGCAGACTCGATGAACA
GTGCTAGCAGCAATCAGAGCAATCAGTTCCGCCACTATAACAGCACCCCA
TCCAGTCTTCATACCACTTGTTTCCTGAAAATTTCCAATGAACGTCAGTG
ACACAAGGAATATGAGTGAGCTGATGAAGCCTCCAAGAATCGTAAACAAC
TCCGTTGATGCCAGCTTCCCTCTATACATTTGTTGAAGAGAGAGGATGAC
AATAAACATAAGAAATGAATAGAGCATCGAACTCCCAGACCCAGCCATGG
CCTTCAAATTGCAGAAACAATATCCAAAACATCAGATAAATAGTTTCCTT
TGAAAAACCCTAGCCCCTCCGATCCGATCTCGTTAGTTGGAACACTAGAG
CTCACCAACAACTCCGATCATTGTAAAATGGCAACCTCGACCATGGCTCT
CTCCTCATCATTCGTCGGCAAGGCTGTGAACCTTGCCCCTTCAGGCAATG
AGCTGAGCAATGGGGGCCGCATCTCCATGCGTAAAACC
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