CF838699

Overview
NameCF838699
Unique NameCF838699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length306
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF838699 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.972e-12
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 2 
Query:    2 KDMAFGCGHQTCCECGHYLELCPFCRRTIQTRIRLY 109
            KDMAFGCGHQTCCECG  L++CP CR  IQTRI+LY
Sbjct:  433 KDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468
[Close]
BLAST of CF838699 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.575e-11
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 2 
Query:    2 KDMAFGCGHQTCCECGHYLELCPFCRRTIQTRIRLY 109
            K+MAFGCGHQTCCECG  L++CP CR  IQTRI+LY
Sbjct:  454 KNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489
The following BLAST results are available for this feature:
BLAST of CF838699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RGLG2_ARATH3.972e-1277.78E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH2.575e-1175.00E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_06F11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838699 ID=CF838699; Name=CF838699; organism=Citrus sinensis; type=EST; length=306bp
GAAAGATATGGCCTTTGGTTGCGGACATCAGACATGTTGCGAATGTGGAC
ACTACCTTGAATTATGTCCCTTTTGTCGACGCACAATCCAGACCCGAATT
AGGCTCTACTAATCTGCATCATCAACAATGACCAAAATTCTTTGTAATTT
GTTTCTTGTAGATGAAAATGTTGTTAGGTTTGCTGAATTCAGCTTGAGAT
GATCTTGGATGCTAGGAAATGGAAGTGTTTAGGTGCTGTACATTATTGTA
AACTTATTGGTCACATTATTTTTTGTTTCTTTTTGTGGGCAAAAAAAAAA
AAAAAA
back to top