CF838700

Overview
NameCF838700
Unique NameCF838700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7308 contig Csv1_Contig7308:100..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838700 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.530e-28
Identity = 84/235 (35.74%), Postives = 119/235 (50.64%), Query Frame = 2
Query:  107 LDPKTNVDSKDVVYSPENNLS----ARLYLPKNTNQNQKLPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSEPT-DVKIRA---GTERFWRFTCPSTSGLDDPWVNPCAD-GSSLASLGCARVLVFAAEKDFL 781
            +D  TN+ ++  +Y P + L       L L K  +  + +P+L++FHGG F   +A S  Y  +   LV+   ++ VSVDYRR+PEH  P AY+D W+A+ WV S V       WL    D    V+ +GDS+G NIAH++A+R   E   G  V+G +L+HP F G E   SE T D K        + +WR   P     D P  NP    G SL  +   + LV  A  D +
Sbjct:   69 VDSTTNLLTR--IYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNE---GVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLV 291          
BLAST of CF838700 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.388e-26
Identity = 84/255 (32.94%), Postives = 123/255 (48.24%), Query Frame = 2
Query:   95 VPPSLDPKTNVDSKDVVYSPENNLSARLYLPKNTNQNQK--------------LPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSEPT-----DVKIRAGTERFWRFTCPSTSGLDDPWVNPCAD-GSSLASLGCARVLVFAAEKDFLCPRGW 796
            V  + +P   V S DV+     NL +R+Y P   +Q Q               +P++++FHGG F   +A S  Y      LV     + VSV+YRRAPE+P P AY+D W A+ WV S         WL    D +  +F +GDS+G NIAH++A+R G     G +V+G +L++P F G E   SE +      V +R   + +W+   P     + P  NP +  G SL  +   + LV  A  D +  R W
Sbjct:   53 VTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNS-------RSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVR-DRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLI--RDW 294          
BLAST of CF838700 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.998e-26
Identity = 82/248 (33.06%), Postives = 119/248 (47.98%), Query Frame = 2
Query:   95 VPPSLDPKTNVDSKDVVYSPENNLSARLYLP------------KNTNQNQKLPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSEPT-----DVKIRAGTERFWRFTCPSTSGLDDPWVNPCADGS-SLASLGCARVLVFAAEKDFL 781
            VP + +P   V S DV+   + NL +R+Y P            +N    + +P++V+FHGG F   +A S  Y      LV     + VSV+YRRAPE+  P AY+D W  +KWV S         WL    D + ++F +GDS+G NI H++A+R     ID   V+G +L++P F G E   SE        V +R   + +WR   P     + P  +P    S SL  L   + LV  A  D +
Sbjct:   53 VPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS-------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRID---VLGNILLNPMFGGTERTESEKRLDGKYFVTVR-DRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLI 289          
BLAST of CF838700 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.618e-25
Identity = 86/278 (30.94%), Postives = 122/278 (43.88%), Query Frame = 2
Query:   59 DGKVERLRGTDI---VPPSLDPKTNVDSKDVVYSPENNLSARLYLPKNTNQNQK---------------------LPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFE-QVFYSGDSAGANIAHHMAIRNGGEIIDGFNVVGIVLIHPYFWGVEPVGSE-PTDVK---IRAGTERFWRFTCPSTSGLDDPWVNPCA-DGSSLASLGCARVLVFAAEKDFLCPRGWFY 802
            DG  ER  G  +   VP +  P   V S D +      L  R+Y        ++                      P++++FHGG F   +A S  Y +     V  +  + VSV+YRRAPEH  P AY+D W A+KWV S       + ++    D + +VF SGDS+G NIAHH+A+R   E   G  V G +L++  F G E   SE   D K        + +W+   P  +  D P  NP   +G  L  L  A+ L+  +  D  C R   Y
Sbjct:   38 DGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADE---GVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAY 305          
BLAST of CF838700 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.079e-14
Identity = 47/136 (34.56%), Postives = 73/136 (53.68%), Query Frame = 2
Query:  113 PKTNVDSKDVVYSPENNLSARLYLPKNTNQNQKLPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNR-NADFEQVFYSGDSAGANIAHHMA 517
            P T+ ++  V  +  NN+  R+Y+PK  ++  +  L  Y HGGG+C+ +A    Y           +++ VS +YR APE+  PI +ED +DA+KW          +D L +   D E+V  SGDSAG N+A  +A
Sbjct:   71 PPTSDENVTVTETTFNNVPVRVYVPKRKSKTLRRGLF-YIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLR-------QDVLEKYGVDPERVGVSGDSAGGNLAAAVA 198          
BLAST of CF838700 vs. ExPASy Swiss-Prot
Match: LIP2_MORS1 (Lipase 2 OS=Moraxella sp. (strain TA144) GN=lip2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 2
Query:  134 KDVVYSPENNLSARLYLPKNTNQNQKLP---LLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFEQVFYSGDSAGANIA 505
            K +  +   +++ R Y     N  +K      +++FHGGGFCI      T+H + + + ++     VSVDYR APE+P P A +D   A  W+A H    G        A   ++  SGDSAG  +A
Sbjct:  129 KTIANADGGDMTVRCYQKSTQNSERKSTDEAAMLFFHGGGFCIGDI--DTHHEFCHTVCAQTGWAVVSVDYRMAPEYPAPTALKDCLAAYAWLAEHSQSLG--------ASPSRIVLSGDSAGGCLA 245          
BLAST of CF838700 vs. ExPASy Swiss-Prot
Match: YFZ3_SCHPO (AB hydrolase superfamily protein C1039.03 OS=Schizosaccharomyces pombe GN=SPAC1039.03 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.810e-11
Identity = 47/162 (29.01%), Postives = 75/162 (46.30%), Query Frame = 2
Query:   38 PLIKVHKDGKVERLRGTDIVPPSLDPKTNVDSKDVVYSPENNLSA------RLYLPKNTNQNQKLPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFEQVFYSGDSAGANIA 505
            P++K H    V+ LR    V P       V+S + +  P  +  A      R++ P  T      P  ++FHGGG+ +      T +++   +  +A  + V+VDYR APE P P   +D W+A+ +   + D  G    +N N    ++   G SAG NIA
Sbjct:   37 PIVKTHTY-PVDFLRNNGNVMPGQSELLPVESTEDITIPRKHTKAPSGVPSRIFRPHGTAPEGGWPCFLWFHGGGWVLGNI--NTENSFATHMCEQAKCVVVNVDYRLAPEDPFPACIDDGWEALLYCYENADTLG----INPN----KIAVGGSSAGGNIA 187          
BLAST of CF838700 vs. ExPASy Swiss-Prot
Match: AAAD_HUMAN (Arylacetamide deacetylase OS=Homo sapiens GN=AADAC PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 42/139 (30.22%), Postives = 67/139 (48.20%), Query Frame = 2
Query:   89 DIVPPSLDPKTNVDSKDVVYSPENNLSARLYLPKNTNQNQKLPLLVYFHGGGFCIETAFSPTYHNYLNDLVSEANIIAVSVDYRRAPEHPLPIAYEDSWDAVKWVASHVDGNGPEDWLNRNADFEQVFYSGDSAGANIA 505
            D VPP+ D    V          NN+  R+Y+PK  ++  +  L  Y HGGG+C+ +A    Y           + + VS +YR AP++  PI +ED ++A++W          +       + E++  SGDSAG N+A
Sbjct:   69 DEVPPTSDENVTVTETKF-----NNILVRVYVPKRKSEALRRGLF-YIHGGGWCVGSAALSGYDLLSRWTADRLDAVVVSTNYRLAPKYHFPIQFEDVYNALRWFLR------KKVLAKYGVNPERIGISGDSAGGNLA 195          
The following BLAST results are available for this feature:
BLAST of CF838700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GI1L2_ARATH2.530e-2835.74Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH1.388e-2632.94Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L3_ARATH8.998e-2633.06Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GID1_ORYSJ7.618e-2530.94Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
AAAD_RABIT2.079e-1434.56Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
LIP2_MORS11.648e-1132.28Lipase 2 OS=Moraxella sp. (strain TA144) GN=lip2 P... [more]
YFZ3_SCHPO2.810e-1129.01AB hydrolase superfamily protein C1039.03 OS=Schiz... [more]
AAAD_HUMAN8.177e-1130.22Arylacetamide deacetylase OS=Homo sapiens GN=AADAC... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06F12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838700 ID=CF838700; Name=CF838700; organism=Citrus sinensis; type=EST; length=805bp
CGCCAACGCATCATTAGAAGTCGCCCATGACTTCTCTCCTTTGATAAAAG
TACACAAAGACGGCAAAGTAGAAAGGCTTAGGGGCACCGATATCGTTCCC
CCATCACTTGATCCCAAAACAAACGTTGATTCCAAAGACGTTGTGTATTC
TCCTGAAAATAATTTATCTGCTCGGCTTTACCTCCCGAAAAACACAAATC
AAAACCAAAAACTTCCCCTTCTTGTTTATTTTCACGGTGGAGGTTTTTGC
ATCGAGACTGCTTTTTCACCAACTTACCATAATTACCTCAACGACTTGGT
CTCTGAAGCTAACATCATCGCAGTCTCGGTCGACTACCGAAGAGCCCCAG
AGCATCCCCTTCCTATCGCTTATGAAGATTCATGGGATGCAGTCAAATGG
GTTGCTTCCCATGTTGACGGAAATGGCCCCGAAGATTGGCTCAACCGTAA
TGCTGATTTTGAGCAAGTGTTTTACTCTGGGGACAGCGCTGGTGCTAATA
TTGCTCATCACATGGCAATAAGAAACGGTGGAGAAATTATCGACGGCTTT
AATGTTGTTGGTATTGTCTTGATTCATCCATACTTTTGGGGTGTTGAACC
TGTTGGTTCCGAGCCTACTGATGTTAAAATAAGAGCTGGAACGGAGAGAT
TTTGGCGATTTACTTGTCCAAGCACAAGCGGGCTCGATGATCCGTGGGTT
AATCCGTGTGCCGACGGTTCGAGCCTCGCGAGCCTGGGGTGCGCCAGGGT
GCTGGTGTTTGCTGCGGAGAAGGATTTCCTGTGCCCTAGAGGATGGTTTT
ACTAT
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