CF838703

Overview
NameCF838703
Unique NameCF838703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length315
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: FYPP_PEA (Phytochrome-associated serine/threonine protein phosphatase OS=Pisum sativum GN=FYPP PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.231e-34
Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 2
Query:   83 MDMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            MD+D WISK K GQHLL+D L+LLCEY KEILIEESNV PVNSPVTVCGDIHGQFHDLMKLF TGGH PETNYIFMG
Sbjct:    1 MDLDQWISKVKDGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMG 77          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: FYPP1_ARATH (Phytochrome-associated serine/threonine protein phosphatase 1 OS=Arabidopsis thaliana GN=FYPP1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.092e-33
Identity = 65/77 (84.42%), Postives = 68/77 (88.31%), Query Frame = 2
Query:   83 MDMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            MD+D WISK K GQHL +D L+LLCEY KEILIEESNV PVNSPVTVCGDIHGQFHDLMKLF TGGH PETNYIFMG
Sbjct:    1 MDLDQWISKVKDGQHLSEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMG 77          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: FYPP3_ARATH (Phytochrome-associated serine/threonine protein phosphatase 3 OS=Arabidopsis thaliana GN=FYPP3 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.889e-33
Identity = 64/77 (83.12%), Postives = 68/77 (88.31%), Query Frame = 2
Query:   83 MDMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            MD+D WISK K GQHL +D L+LLCEY KEILIEESNV PVNSPVTVCGDIHGQFHDLMKLF TGGH P+TNYIFMG
Sbjct:    1 MDLDQWISKVKDGQHLSEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPDTNYIFMG 77          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PPP6_DICDI (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Dictyostelium discoideum GN=ppp6c PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.456e-22
Identity = 44/81 (54.32%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   71 VEN*MDMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            + N + +D W+   ++ ++L ++ L+ LCE  KE+L+EESNV PV SPVT+CGDIHGQF+DL++LF TGG  P+TNY+FMG
Sbjct:    1 MSNALPLDEWVETARQCKYLPENDLKKLCERVKELLLEESNVQPVRSPVTICGDIHGQFYDLLELFKTGGEVPDTNYVFMG 81          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PPE1_SCHPO (Serine/threonine-protein phosphatase ppe1 OS=Schizosaccharomyces pombe GN=ppe1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.715e-21
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D WI+  +K ++L +  L+ LCE  K IL+EESN+ PV +PVTVCGDIHGQF+DL++LF  GG  P TNYIFMG
Sbjct:    3 DLDEWIATVRKCKYLPEHQLKRLCEMVKVILMEESNIQPVRTPVTVCGDIHGQFYDLLELFRVGGELPSTNYIFMG 78          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2AB_BOVIN (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Bos taurus GN=PPP2CB PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.632e-21
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D W+ +  + + L ++ +R LCE AKEIL +ESNV  V  PVTVCGD+HGQFHDLM+LF  GG  P+TNY+FMG
Sbjct:    9 DLDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMG 84          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PPP6_DROME (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Drosophila melanogaster GN=PpV PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.900e-21
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D WI   KK ++L ++ L+ LCE   +IL+EE+N+ PV++PVTVCGDIHGQF+DL +LF TGG  P TNYIFMG
Sbjct:    3 DVDKWIEDVKKCKYLPENELKKLCEMVCDILLEETNILPVSTPVTVCGDIHGQFYDLEQLFRTGGQVPHTNYIFMG 78          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A3_ARATH (Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.032e-20
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 2
Query:   83 MDMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            +D+D  IS+  + + L +  +R LCE AKEIL++ESNV PV SPVT+CGDIHGQFHDL +LF  GG  P+TNY+FMG
Sbjct:   12 LDLDEQISQLMQCKPLSEQQVRALCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMG 88          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PP2A2_SCHPO (Major serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Schizosaccharomyces pombe GN=ppa2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.032e-20
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 2
Query:   86 DMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            D+D WI + KK + L +  + +LC+ A+E+L +E+NV PV +PVTVCGDIHGQFHDLM+LF  GG  P+ NY+FMG
Sbjct:   22 DVDRWIEQLKKCEPLSEADVEMLCDKAREVLCQENNVQPVRNPVTVCGDIHGQFHDLMELFKIGGDVPDMNYLFMG 97          
BLAST of CF838703 vs. ExPASy Swiss-Prot
Match: PPP6_RAT (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Rattus norvegicus GN=Ppp6c PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.348e-20
Identity = 42/77 (54.55%), Postives = 62/77 (80.52%), Query Frame = 2
Query:   83 MDMDHWISKDKKGQHLLQD*LRLLCEYAKEILIEESNVHPVNSPVTVCGDIHGQFHDLMKLFHTGGHEPETNYIFMG 313
            +D+D ++   ++ ++L ++ L+ LC+Y  ++L+EESNV PV++PVTVCGDIHGQF+DL +LF TGG  P+TNYIFMG
Sbjct:    4 LDLDKYVEIARQCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCELFRTGGQVPDTNYIFMG 80          
The following BLAST results are available for this feature:
BLAST of CF838703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
FYPP_PEA6.231e-3485.71Phytochrome-associated serine/threonine protein ph... [more]
FYPP1_ARATH3.092e-3384.42Phytochrome-associated serine/threonine protein ph... [more]
FYPP3_ARATH6.889e-3383.12Phytochrome-associated serine/threonine protein ph... [more]
PPP6_DICDI2.456e-2254.32Serine/threonine-protein phosphatase 6 catalytic s... [more]
PPE1_SCHPO2.715e-2159.21Serine/threonine-protein phosphatase ppe1 OS=Schiz... [more]
PP2AB_BOVIN4.632e-2157.89Serine/threonine-protein phosphatase 2A catalytic ... [more]
PPP6_DROME7.900e-2159.21Serine/threonine-protein phosphatase 6 catalytic s... [more]
PP2A3_ARATH1.032e-2059.74Serine/threonine-protein phosphatase PP2A-3 cataly... [more]
PP2A2_SCHPO1.032e-2056.58Major serine/threonine-protein phosphatase PP2A-2 ... [more]
PPP6_RAT1.348e-2054.55Serine/threonine-protein phosphatase 6 catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06F15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838703 ID=CF838703; Name=CF838703; organism=Citrus sinensis; type=EST; length=315bp
TATTGAAAAATTTCCTGGGCCTTTCTCTCTCTGTGAACACAAAAACCCTA
ATTTCTTGGCCTTCATTTTCGTGGAAAATTGAATGGATATGGATCACTGG
ATATCCAAAGACAAAAAGGGCCAGCATCTTTTACAAGACTAGCTTCGGCT
CCTCTGCGAATACGCGAAAGAAATCCTTATTGAAGAGTCCAATGTGCATC
CTGTTAACAGTCCGGTCACTGTCTGTGGCGATATTCATGGCCAGTTTCAT
GACCTAATGAAACTTTTTCACACAGGAGGTCATGAACCAGAGACAAATTA
CATATTTATGGGTGA
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