CF838713

Overview
NameCF838713
Unique NameCF838713
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2797 contig Csv1_Contig2797:361..1120. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838713 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 7.058e-62
Identity = 117/163 (71.78%), Postives = 133/163 (81.60%), Query Frame = -3
Query:  270 VDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKDLMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIDLMVDKSENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNCGK 758
            V+NG+TYCVVA +S+GRQIPMAFLERVK++F  +YGGGKAATA AN LNKEFG KLK+ MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI+L+VDK+ENL  QAQDFR+ GT+MRRKMW QNM                  LS+C GFNCGK
Sbjct:   59 VENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILIIILSICGGFNCGK 221          
BLAST of CF838713 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.054e-61
Identity = 116/161 (72.05%), Postives = 133/161 (82.61%), Query Frame = -3
Query:  276 VDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKDLMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIDLMVDKSENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 758
            V++G+TYCVVA +S+GRQIPM+FLERVK++F  +YGGGKAATA AN LNKEFG KLK+ MQYC+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI+L+VDK+ENL  QAQDFR+TGT+MRRKMWLQNM                  LSVCHGF C
Sbjct:   59 VEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGFKC 219          
BLAST of CF838713 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.127e-59
Identity = 112/160 (70.00%), Postives = 128/160 (80.00%), Query Frame = -3
Query:  276 DNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKDLMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIDLMVDKSENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 755
            DNG+TYCVV  ES+GRQIPMAFLERVK++F  +YGGGKA+TA AN LNKEFG KLK+ MQYC DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKI+L+VDK+ENL  QAQDFR+ GTKM+RK+W +NM                  LSVCHGF C
Sbjct:   60 DNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHGFKC 219          
BLAST of CF838713 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 7.304e-59
Identity = 113/161 (70.19%), Postives = 128/161 (79.50%), Query Frame = -3
Query:  276 VDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKDLMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIDLMVDKSENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 758
            V+NG+TYCVVA ES GRQIPMAFLERVK++F  +YGGGKA TA AN LN+EFG KLK+ MQYCVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKI+L+VDK+ENL  QAQDFR+ GTK+RRKMW +NM                  LSVC GF C
Sbjct:  124 VENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGFKC 284          
BLAST of CF838713 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.688e-47
Identity = 90/161 (55.90%), Postives = 115/161 (71.43%), Query Frame = -3
Query:  276 VDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKDLMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIDLMVDKSENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 758
            V++GY YCVVA +S  +QI +AFLERVK +F  +YGGGKA+TA A  LNKEFGP +K+ M Y VDH EEI KL KVKAQVSEVK +M+ENI+K +DRGE + ++ DK+ENL  QAQ+++  GT++RRK+W QNM                  +SVCHGFNC
Sbjct:   60 VEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHGFNC 220          
BLAST of CF838713 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.891e-44
Identity = 97/163 (59.51%), Postives = 113/163 (69.33%), Query Frame = -3
Query:  270 VDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKDLMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIDLMVDKSENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNCGK 758
            V+NG+TYCVVA +S+GR+IPMAFLERVK++F  +YGG KAAT  AN LNKEFG  LK+ MQYC+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG  I  M+  SE+   Q Q F    T+M+RK W QNM                  LSVC GFNCGK
Sbjct:   59 VENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARG-VICEMLGSSES---QPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK 217          
BLAST of CF838713 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.917e-40
Identity = 84/180 (46.67%), Postives = 112/180 (62.22%), Query Frame = -3
Query:  276 VDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGG-------------------KAATAPANGLNKEFGPKLKDLMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIDLMVDKSENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHGFNC 758
            VDNG+ + VVADES+GR +P  FLERVK++F  +Y                          + A  L++EFGP LK+ MQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKI+L+VDK+ENL  QA  F+  G ++RRKMWLQ++                  +  C GF C
Sbjct:   59 VDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKC 238          
BLAST of CF838713 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.591e-21
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = -3
Query:  285 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKDLMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIDLMVDKSENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHG 752
            +G T   +ADE++GR IP AFL+ +   FV  YG     +A A  +N EF   L   M++  + P    +++++K ++S+V+ VM+ENI+KVLDRGE+++L+VDK+EN+      FR    + R  MW +N+                    VCHG
Sbjct:   60 DGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTIALILVLALVVYIAMAFVCHG 213          
BLAST of CF838713 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.347e-20
Identity = 46/131 (35.11%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  360 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKDLMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIDLMVDKSENLHQQAQDFRSTGTKMRRKMWLQN 752
            +G T+  +A+++ GR++P ++LE +   F+  YG   A  APA  +N EF   L   M++   +P  +  L +V+ +VSE++ VM+ENIEK+++RG++I+L+VDK+  +   +  FR    ++RR +W++N
Sbjct:   60 DGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGK-VAHNAPAYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKN 188          
BLAST of CF838713 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.759e-20
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = -3
Query:  285 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGPKLKDLMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIDLMVDKSENLHQQAQDFRSTGTKMRRKMWLQNMXXXXXXXXXXXXXXXXXXLSVCHG 752
            +G T   +A+E++GR+IP AFLE +   FV  YG     TA A  +N+EF   L   + Y  + P    ++ ++K ++++V+GVM+ENI+KVLDRGE+++L+VDK+ N+      FR    + R  +W +N                     +CHG
Sbjct:   59 DGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYIAVAFLCHG 212          
The following BLAST results are available for this feature:
BLAST of CF838713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VA722_ARATH7.058e-6271.78Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA721_ARATH2.054e-6172.05Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA726_ARATH1.127e-5970.00Putative vesicle-associated membrane protein 726 O... [more]
VA725_ARATH7.304e-5970.19Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA724_ARATH1.688e-4755.90Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH3.891e-4459.51Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA727_ARATH9.917e-4046.67Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA713_ARATH1.591e-2135.26Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA714_ARATH1.347e-2035.11Vesicle-associated membrane protein 714 OS=Arabido... [more]
VA711_ARATH1.759e-2033.97Vesicle-associated membrane protein 711 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06G01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838713 ID=CF838713; Name=CF838713; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTACCTATTAAGGCCTATTTTAGATCTGGACGGGATAATCAGCA
CCAGCATCTTTGCACAAGGATTCTCACAATATAATGACGGGACTCATTCA
CAAGCAAAAATAAGTTTTCGGTTTTCTTTGTAACAAATATAGGGAAACTG
CTAACTTTTTTAGACTAAATACAAAGGCAAGATCATATATATGTATATAT
CTCTTTCACAATATCATCACAGAAGCTCTTAAAAGAGCGTAGTATAAGCC
TCCTGGAGAATAGCACTCATTTTCCGCAGTTGAAACCATGGCAAACAGAG
AGGACTATGATGAGGATCAAGGCAATCAGTATTCCCAAAACAATCAGCTT
GATCTTCATATTTTGCAGCCACATTTTCCTCCGCATTTTGGTCCCCGTAC
TCCGAAAGTCTTGTGCCTGCTGATGAAGGTTCTCAGACTTATCGACCATT
AGGTCAATCTTTTCCCCCCTATCTAAAACCTTTTCAATATTCTCCATCAT
AACACCTTTGACTTCTGAAACCTGAGCCTTAACCTTCGCAAGCTTGCTGA
TCTCCTCAGGATGATCAACACAGTACTGCATAAGATCTTTCAATTTTGGA
CCAAATTCCTTGTTCAGGCCATTGGCAGGAGCCGTGGCAGCCTTTCCACC
CCCATATTTGGAAACAAATTCATCCTTGACGCGCTCCAGAAAAGCCATCG
GTATTTGTCTTCCGGACGATTCATCTGCGACCACACAATATGTGTAACCA
TTATCGACGA
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