CF838822

Overview
NameCF838822
Unique NameCF838822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838822 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.507e-22
Identity = 52/121 (42.98%), Postives = 77/121 (63.64%), Query Frame = -2
Query:  399 CQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISFETRYANSMGFMKAEPISGCAEVLRLYQEED 761
            C+AGF T  T YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VLV+SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  P+  CA +L+    +D
Sbjct:   46 CRAGFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of CF838822 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.602e-21
Identity = 48/118 (40.68%), Postives = 75/118 (63.56%), Query Frame = -2
Query:  417 CQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPG---RERSRVILTSYNGISFETRYANSMGFMKAEPISGCAEVLR 761
            C+  F T  +TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS   R AN +GFMK +P+  CA+ LR
Sbjct:   38 CRTQFVTKLSTYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of CF838822 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.946e-20
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = -2
Query:  399 CQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISFE-TRYANSMGFMKAEPISGCAEVLRLYQEED 761
            C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:   17 CRAGFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of CF838822 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.558e-19
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = -2
Query:  420 CQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISFETRYANSMGFMKAEPISGCAEVL 761
            C+  FET  +  + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  +V SP+ DCK    G E++R+  +   GI    R+AN + FMKAE + GC E L
Sbjct:   38 CRVQFETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of CF838822 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.699e-19
Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = -2
Query:  411 CQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISFE-TRYANSMGFMKAEPISGCAEVLRLY 761
            C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:   17 CRAGFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of CF838822 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 46/125 (36.80%), Postives = 72/125 (57.60%), Query Frame = -2
Query:  396 CQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAP---GRERSRVILTSYNGISFETRYANSMGFMKAEPISGCAEVLRLYQEEDV 761
            C+  F T  +T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  LV SP ++C  V+     ++ ++V LTS NG + + R AN++GFM+ EP+  C EVL+     DV
Sbjct:   41 CRIQFMTRISTIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
BLAST of CF838822 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.927e-15
Identity = 37/113 (32.74%), Postives = 64/113 (56.64%), Query Frame = -2
Query:  423 CQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISFETRYANSMGFMKAEPISGCAEV 761
            C+AGF T  + +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  L+SS + DC  +         +    N ++  TR  N +GF K E +  CA+V
Sbjct:   22 CRAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQV 134          
BLAST of CF838822 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.739e-13
Identity = 37/116 (31.90%), Postives = 66/116 (56.90%), Query Frame = -2
Query:  423 CQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLVSSPQNDCKTVAPG---RERSRVILTSYNGISFETRYANSMGFMKAEPISGCAEV 761
            C+A F T  + +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  L+SS + DC  +      +   + +L + NG    TR  N +GF+K E +  C +V
Sbjct:   22 CRARFITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNG---TTRTINPLGFLKKEVLPKCPQV 134          
The following BLAST results are available for this feature:
BLAST of CF838822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSC13_MAIZE5.507e-2242.98Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
OLEE1_BETVE1.602e-2140.68Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
PHLB_PHLPR3.946e-2039.34Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LAT52_SOLLC2.558e-1938.60Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
LOLB_LOLPR5.699e-1938.98Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
CHE1_CHEAL5.334e-1736.80Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
ALL1_OLEEU2.927e-1532.74Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
LIGV1_LIGVU2.739e-1331.90Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06L08_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838822 ID=CF838822; Name=CF838822; organism=Citrus sinensis; type=EST; length=762bp
CGGTTAGAGTTTTTTTTTGTTTTTTTTTTTTTAAACTAAACCCTACTGGG
GCCCTCAATTCCAGAGTTTTCGGCTAATGTTTTAGAACACATAGAATTAC
AAGAGAAAAAGTAGCGGACTAGCTGAAGTCCATAGCTTCAAAGGCTGGAA
CGGATTTATTGTGAAAATAAATCAGGCATTACTAGCGAGAAAACACATCT
CAAAGCTAGAAGCACCAGCATATAAATAAATTAATAGAGTACACGTCCTT
TAACAACAAATTAAGAATTCTCTAAACATAGAAACAACACAGCCATCCAG
GGACTACTAATAGAAGAGACAGTATGATAGCTGGGCCAACACAAAGCTTA
AACAAATGGAAAGCGATAGAAAAAACCATGCCACACCATTCTCTACACAT
CCTCCTCCTGATATAGCCTGAGAACCTCAGCACAGCCAGAGATGGGCTCT
GCCTTCATGAAGCCCATTGAATTGGCATATCGGGTTTCAAAAGAAATGCC
GTTGTAACTGGTCAAGATCACACGGGAACGCTCACGCCCTGGGGCAACTG
TTTTGCAGTCATTCTGGGGGCTGCTAACGAGGACAGCATCGCAAAGTTGA
TCCTGATGGTCTTCTGAAACGAGGATCTTATATGTTCCAGTGGAGTCTGT
TTTCCCTTCCCTGCTATATACTACTTGCATTGACTTCCTGTCTTTGCATT
CAACCTTCACCTTGGCACCGGCGATGTATGTGGTGGCGGGGGTCTCGAAG
CCGGCTTGGCAG
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