CF838823

Overview
NameCF838823
Unique NameCF838823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838823_ssr227 microsatellite CF838823_ssr227:227..238. BLAST: Citrus ESTs to Prunus persica proteins V1
CF838823_ssr312 microsatellite CF838823_ssr312:312..323. BLAST: Citrus ESTs to Prunus persica proteins V1
CF838823_ssr506 microsatellite CF838823_ssr506:506..517. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF838823 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 58/152 (38.16%), Postives = 71/152 (46.71%), Query Frame = 1
Query:   22 FRGVRQRPWA*WAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFPDSTTVATAYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGDQIQSDFWEMIGED-EIQQWMT---MMDFGT-DSSDSANT 462
            +RGVRQRPW  +AAEIRDP+RATRVWLGTF T              FRGPRAKLNFPF D T+  ++                                             D ++++ W   G D  +++WM    MMDFG  DSSDS NT
Sbjct:  136 YRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSS-------------------------PVAADDIGAKASASASVSATDSVEAEQWNGGGGDCNMEEWMNMMMMMDFGNGDSSDSGNT 262          
BLAST of CF838823 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.230e-13
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   16 EEFRGVRQRPWA*WAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 192
            +++RGVRQRPW  WAAEIRDP +ATRVWLGTF T              FRG +AKLNFP
Sbjct:   59 KKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117          
BLAST of CF838823 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.606e-13
Identity = 37/66 (56.06%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   10 ALEEFRGVRQRPWA*WAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFPDST 207
            A  +FRGVRQRPW  WAAEIRDP R  RVWLGTF+T               RGP A+LNFP P  T
Sbjct:   83 ATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVT 148          
BLAST of CF838823 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13
Identity = 35/57 (61.40%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   22 FRGVRQRPWA*WAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 192
            +RGVRQRPW  WAAEIRDP RA RVWLGTF+T              FRG +AKLNFP
Sbjct:   77 YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133          
BLAST of CF838823 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.970e-13
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 ERGALEEFRGVRQRPWA*WAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFPDST 207
            +R    +FRG+RQRPW  WAAEIRDPR+  RVWLGTFN+               RG +AK+NFP   +T
Sbjct:  113 KRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPEAPTT 181          
BLAST of CF838823 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.970e-13
Identity = 34/57 (59.65%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   22 FRGVRQRPWA*WAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 192
            +RGVRQRPW  WAAEIRDP +A RVWLGTF+T              FRG +AKLNFP
Sbjct:   70 YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CF838823 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.041e-12
Identity = 37/65 (56.92%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   22 FRGVRQRPWA*WAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFPFP-DSTTV 213
            FRGVR+RPW  +AAEIRDP + TRVWLGTF+T              FRG +AK NFP P +STTV
Sbjct:   33 FRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTV 97          
BLAST of CF838823 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.041e-12
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   22 FRGVRQRPWA*WAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 192
            +RGVRQRPW  WAAEIRDP++A RVWLGTF T              F+G +AKLNFP
Sbjct:   90 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
BLAST of CF838823 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.041e-12
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   22 FRGVRQRPWA*WAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 192
            +RGVRQRPW  WAAEIRDP++A RVWLGTF T              F+G +AKLNFP
Sbjct:   39 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of CF838823 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.359e-12
Identity = 33/57 (57.89%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   22 FRGVRQRPWA*WAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFP 192
            +RGVRQRPW  WAAEIRDP++A RVWLGTF T              F+G +AKLNFP
Sbjct:   92 YRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFP 148          
The following BLAST results are available for this feature:
BLAST of CF838823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
EF109_ARATH2.394e-1738.16Ethylene-responsive transcription factor ERF109 OS... [more]
RAP26_ARATH1.230e-1359.32Ethylene-responsive transcription factor RAP2-6 OS... [more]
CRF1_ARATH1.606e-1356.06Ethylene-responsive transcription factor CRF1 OS=A... [more]
EF110_ARATH3.578e-1361.40Ethylene-responsive transcription factor ERF110 OS... [more]
ERF1_ORYSJ7.970e-1349.28Ethylene-responsive transcription factor 1 OS=Oryz... [more]
EF112_ARATH7.970e-1359.65Ethylene-responsive transcription factor ERF112 OS... [more]
ERF80_ARATH1.041e-1256.92Ethylene-responsive transcription factor 9 OS=Arab... [more]
EF114_ARATH1.041e-1257.89Ethylene-responsive transcription factor ERF114 OS... [more]
EF113_ARATH1.041e-1257.89Ethylene-responsive transcription factor ERF113 OS... [more]
EF115_ARATH1.359e-1257.89Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838823 ID=CF838823; Name=CF838823; organism=Citrus sinensis; type=EST; length=760bp
GAAAGAGGAGCCTTAGAAGAATTCAGAGGGGTGAGGCAGAGGCCGTGGGC
ATAATGGGCGGCTGAGATTCGTGACCCGAGGAGGGCGACCCGTGTCTGGC
TGGGGACGTTCAACACGGCGGAGGAGGCAGCGAGGGCGTACGATAAGGCC
GCCGTTGAGTTCCGTGGGCCCAGGGCCAAGCTTAATTTCCCATTTCCCGA
TAGCACGACGGTGGCAACAGCATACGAGCAGCAGCAGCAGGGGGAGTCAT
CGCATTCACAGCAGCCACAACAAGTGGTGTCGCAAGACAGCAATCAAAGT
GTTGCGAGAACTAATAATAATAATGGGAATTCGGCGGCGGCAACAGAAGC
AATGGGGGATCAGATTCAGAGTGACTTTTGGGAGATGATTGGAGAAGACG
AGATTCAACAGTGGATGACGATGATGGATTTTGGCACCGATTCCTCTGAC
TCTGCTAATACTGCCACTGGTCTTACTTCATGATTAGTTAATTAAGTAAT
TAGAATGTTTGTTTGTTTCCTTGTTTTTTTTTTTAAAAAAAAAAATTAGT
TAATTACAGTGTTTAATCAATTAATTCAGCCAATTATTTGATTGTATCTG
TAAAGAAGAGATAAGATCATCAATTTGGAGATCGATTATGTGAACAATAA
ATATATCTCTTACTAACTCAGTTCAACATCGGTCCCAATTATTTTATTGA
TTTGATTTTCCAAAATTTTATCCGGAGGTGCTGCTGCTGAACTGAAGATT
GGCTTGCTGA
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