CF838825

Overview
NameCF838825
Unique NameCF838825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3649 contig Csv1_Contig3649:384..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838825 vs. ExPASy Swiss-Prot
Match: APX4_ARATH (Probable L-ascorbate peroxidase 4, chloroplastic OS=Arabidopsis thaliana GN=APX4 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 9.886e-53
Identity = 99/119 (83.19%), Postives = 107/119 (89.92%), Query Frame = 3
Query:   18 GLFEKQFGRTDALEPDPEGRVPQWEKATVQEMKDKFSAIGFGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKI 374
            GLF++ FGR+DA E DPEGRVPQW KATVQEMKDKF A+G GPRQLAVMSAFLGPDQAATE LLATD  V+PWVQKYQRSRETVSQTDYEVDLIT FTKLS LGQQIN+EAYTYP ++I
Sbjct:  224 GLFDRNFGRSDATEADPEGRVPQWGKATVQEMKDKFIAVGLGPRQLAVMSAFLGPDQAATEQLLATDPQVAPWVQKYQRSRETVSQTDYEVDLITAFTKLSCLGQQINFEAYTYPVERI 342          
BLAST of CF838825 vs. ExPASy Swiss-Prot
Match: APX4_SOLLC (Putative L-ascorbate peroxidase, chloroplastic OS=Solanum lycopersicum GN=CLEB3J9 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.757e-52
Identity = 97/120 (80.83%), Postives = 110/120 (91.67%), Query Frame = 3
Query:   18 GLFEKQFGRTDALEPDPEGRVPQWEKATVQEMKDKFSAIGFGPRQLAVMSAFLGPDQAATEALLATDKDVSPWVQKYQRSRETVSQTDYEVDLITTFTKLSSLGQQINYEAYTYPAQKIE 377
            G F++ FGR+DA EPDPEGRVPQW+KA+VQEMKDKF A+G GPRQLAVMS+FLGPDQAATEALLA+D +V PW+QKYQRSRETVS+TDYEVDLITT TKLSSLGQ INYEAYTYP +KI+
Sbjct:  220 GQFDRIFGRSDAQEPDPEGRVPQWDKASVQEMKDKFKAVGLGPRQLAVMSSFLGPDQAATEALLASDPEVLPWIQKYQRSRETVSRTDYEVDLITTVTKLSSLGQVINYEAYTYPPRKID 339          
The following BLAST results are available for this feature:
BLAST of CF838825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APX4_ARATH9.886e-5383.19Probable L-ascorbate peroxidase 4, chloroplastic O... [more]
APX4_SOLLC3.757e-5280.83Putative L-ascorbate peroxidase, chloroplastic OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06L11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838825 ID=CF838825; Name=CF838825; organism=Citrus sinensis; type=EST; length=563bp
CTCAAATGGTCCCATTGGGCCTGTTTGAAAAGCAATTTGGAAGGACAGAT
GCCCTTGAGCCAGATCCAGAGGGAAGGGTTCCCCAGTGGGAGAAAGCTAC
TGTCCAGGAAATGAAAGATAAATTCTCAGCAATTGGCTTTGGTCCCCGCC
AGCTAGCTGTTATGTCTGCGTTCTTGGGTCCTGATCAGGCAGCAACAGAA
GCCTTATTGGCCACCGATAAAGATGTTTCTCCTTGGGTTCAGAAATACCA
ACGTAGCAGAGAAACAGTGTCTCAGACTGATTATGAGGTCGATCTGATAA
CTACATTCACGAAATTAAGTAGCCTGGGCCAACAAATCAATTACGAGGCT
TACACATATCCTGCTCAAAAGATTGAATTGGGCAAACTCAAATTGTAGAC
AGGAAATGGACTGTGTTCCGAGAGCGGAAGTGCCAATGATTCCGCCAATA
ACTTTTTTGTAAAGCAGAGCTATTCCTCTACAATTTGGAGATTTATGTAG
GGAATTGATGCCGCAGGTTCTACATATCAATTTAAGAGTGCCTAAATAAA
AAAAAAAAAAAAA
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