CF838827

Overview
NameCF838827
Unique NameCF838827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6087 contig Csv1_Contig6087:26..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838827 vs. ExPASy Swiss-Prot
Match: COGT2_ARATH (Cytokinin-O-glucosyltransferase 2 OS=Arabidopsis thaliana GN=UGT85A1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.877e-15
Identity = 67/256 (26.17%), Postives = 124/256 (48.44%), Query Frame = 1
Query:   16 HXLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVESLQGKNYLE--EQIRLVSIPDGM--EPWEDRNDFGKLIENFLQVMPGKLEKLIEEINSRED-EKIDCFIADGNMGWSLEVAKKMNVRGAVFWSSSAALVALVFCIPKLIDDGII----DSHGTPMSMQ--MFRIAPKMPEMNSRDC-FWAHIGDLTTQKIFFDL--LERNRRAMMAVNFHFCNSTYELESEAFTMFPELLPIGPL-IASNRQ 738
            H + +P PAQGH+ P++  ++ L   GF VTFVNT Y H R + S +G N L+     R  SI DG+     +   D   L E+ ++       +L++ IN+ ++   + C ++DG M ++L+VA+++ V   +FW++S             I+ G+     +S+ T   ++  +    P M  +  +D   +    +     I F L   ER +RA   +   F +  +++     ++ P +  +GPL + +NR+
Sbjct:   13 HVVCVPYPAQGHINPMMRVAKLLHARGFYVTFVNTVYNHNRFLRS-RGSNALDGLPSFRFESIADGLPETDMDATQDITALCESTMKNCLAPFRELLQRINAGDNVPPVSCIVSDGCMSFTLDVAEELGVPEVLFWTTSGCAFLAYLHFYLFIEKGLCPLKDESYLTKEYLEDTVIDFIPTMKNVKLKDIPSFIRTTNPDDVMISFALRETERAKRASAIILNTFDDLEHDVVHAMQSILPPVYSVGPLHLLANRE 267          
BLAST of CF838827 vs. ExPASy Swiss-Prot
Match: HMNGT_SORBI (Cyanohydrin beta-glucosyltransferase OS=Sorghum bicolor GN=UGT85B1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 62/272 (22.79%), Postives = 114/272 (41.91%), Query Frame = 1
Query:   16 HXLVMPGPAQGHVIPLLEFSQCLAKHGFRVTFVNTDYYHKRVVE-----SLQGKNYLEEQIRLVSIPDGMEPWEDRNDFGKLIE----NFLQVMPGKLEKLIEEINSREDEKIDCFIADGNMGWSLEVAKKMNVRGAVFWSSSAALVALVFCIPKLIDDGII-----------DSHGTPMSMQMFRIAPKMPEMNSRDCFWAHIGDLTTQKIFFDLLERNRRAMMAVNFHFCNSTYELESEAF----TMFPELLPIGPL--IASNRQGNSAG 753
            H +++P P QGHV PL++ ++ L   G RVTFV T Y ++R++      +++       + R+  I DG+     +ND G L++    N L      L +L +E+  ++   + C + D  M ++   A++  +    F+++SA  +       +L++ G++           D   TP+        P M  M  RD             +      +   +         N+ YELE +        FP +  +GPL  + ++    SAG
Sbjct:   12 HVVLVPFPGQGHVAPLMQLARLLHARGARVTFVYTQYNYRRLLRAKGEAAVRPPATSSARFRIEVIDDGLSLSVPQNDVGGLVDSLRKNCLHPFRALLRRLGQEVEGQDAPPVTCVVGDVVMTFAAAAAREAGIPEVQFFTASACGLLGYLHYGELVERGLVPFRDASLLADDDYLDTPLEW-----VPGMSHMRLRD-MPTFCRTTDPDDVMVSATLQQMESAAGSKALILNTLYELEKDVVDALAAFFPPIYTVGPLAEVIASSDSASAG 277          
The following BLAST results are available for this feature:
BLAST of CF838827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
COGT2_ARATH3.877e-1526.17Cytokinin-O-glucosyltransferase 2 OS=Arabidopsis t... [more]
HMNGT_SORBI1.167e-1122.79Cyanohydrin beta-glucosyltransferase OS=Sorghum bi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06L13_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838827 ID=CF838827; Name=CF838827; organism=Citrus sinensis; type=EST; length=766bp
GGAAATGACCATTCACACNTTTTGGTGATGCCTGGTCCAGCACAAGGCCA
TGTAATTCCTTTACTGGAGTTTTCACAATGTCTGGCAAAACATGGCTTCC
GAGTCACATTCGTTAATACGGATTATTATCACAAGCGGGTAGTGGAATCA
TTGCAGGGAAAGAATTATCTAGAGGAGCAAATCCGTTTGGTTTCGATCCC
AGATGGGATGGAACCCTGGGAAGATAGAAACGATTTCGGAAAGCTAATTG
AAAATTTTTTACAGGTTATGCCGGGGAAGCTGGAGAAGCTCATAGAAGAG
ATCAACAGTAGAGAAGATGAAAAAATTGATTGTTTCATTGCAGATGGGAA
CATGGGTTGGTCTTTGGAGGTAGCAAAAAAGATGAACGTCAGGGGGGCTG
TCTTTTGGTCTTCATCAGCAGCATTAGTGGCATTGGTATTTTGTATCCCC
AAACTTATTGATGATGGAATCATTGACAGTCACGGAACTCCTATGAGCAT
GCAGATGTTTCGAATTGCACCAAAGATGCCTGAAATGAACTCTAGAGACT
GTTTTTGGGCACATATTGGTGACTTGACCACGCAAAAGATTTTTTTTGAT
TTACTGGAAAGAAACAGGAGAGCAATGATGGCGGTAAATTTCCACTTTTG
TAACTCAACATATGAGCTCGAGTCTGAAGCATTCACCATGTTTCCGGAAC
TTCTGCCAATAGGACCACTTATAGCAAGCAACCGCCAAGGGAATTCAGCA
GGATACTTCTGGCGCG
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