CF838828

Overview
NameCF838828
Unique NameCF838828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838828 vs. ExPASy Swiss-Prot
Match: VSR4_ARATH (Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2)

HSP 1 Score: 417.927 bits (1073), Expect = 3.648e-116
Identity = 194/230 (84.35%), Postives = 213/230 (92.61%), Query Frame = 2
Query:  182 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKS 871
            +RFVVEKNSL VTSPE IKG+HDSAIGNFGIPQYGGSMAG V YPKEN+K C+EF DF ISFK++PGALP F+LVDRGDCFFALKVWNAQKAGASAVLVAD+++E LITMDTPEED+SSAKYIENITIPSAL+ K FGE LKK++SGG+MVN+NLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLM FVK+F+G AQILEKGG+TQF PHYITWYCP  FTLSRQCKS
Sbjct:   24 ARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSAKYIENITIPSALVTKGFGEKLKKAISGGDMVNLNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGFTQFRPHYITWYCPHAFTLSRQCKS 253          
BLAST of CF838828 vs. ExPASy Swiss-Prot
Match: VSR3_ARATH (Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1)

HSP 1 Score: 417.927 bits (1073), Expect = 3.648e-116
Identity = 194/230 (84.35%), Postives = 213/230 (92.61%), Query Frame = 2
Query:  182 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKS 871
            +RFVVEKNSL VTSPE IKG+HDSAIGNFGIPQYGGSMAG V YPKEN+K C+EF DF ISFK++PGALP F+LVDRGDCFFALKVWNAQKAGASAVLVAD+++E LITMDTPEED+SSAKYIENITIPSAL+ K FGE LKK++SGG+MVN+NLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLM FVK+F+G AQILEKGG+TQF PHYITWYCP  FTLSRQCKS
Sbjct:   24 ARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSAKYIENITIPSALVTKGFGEKLKKAISGGDMVNLNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGFTQFRPHYITWYCPHAFTLSRQCKS 253          
BLAST of CF838828 vs. ExPASy Swiss-Prot
Match: VSR1_PEA (Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 6.439e-113
Identity = 194/232 (83.62%), Postives = 210/232 (90.52%), Query Frame = 2
Query:  176 SVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKS 871
            S +RFVVEKNSL VTSPEKIKG HDSAIGNFGIPQYGGSMAG V YPK+N KGC+   DF  SFK++PGALP  +L+DRG CFFALKVWNAQKAGASAVLVADDIEE LITMDTPEED+SSAKYIENITIPSALI KSFGE LK ++SGG+MVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDML+ F+K+F+G AQILEKGGYTQFTPHYITWYCP  FTLS+QCKS
Sbjct:   20 STARFVVEKNSLSVTSPEKIKGKHDSAIGNFGIPQYGGSMAGNVVYPKDNSKGCK---DFDSSFKSRPGALPTILLLDRGSCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDVSSAKYIENITIPSALIGKSFGEKLKDAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLIEFLKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKS 248          
BLAST of CF838828 vs. ExPASy Swiss-Prot
Match: VSR1_ARATH (Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2)

HSP 1 Score: 356.681 bits (914), Expect = 9.980e-98
Identity = 160/235 (68.09%), Postives = 196/235 (83.40%), Query Frame = 2
Query:  167 VHTSVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKS 871
            ++ ++ RFVVEKN+L VTSP+ IKG ++ AIGNFG+PQYGG++ G V YPK N+K C+ + DF ISFK+KPG LP FVL+DRGDC+F LK W AQ+AGA+A+LVAD   E LITMDTPEED S A Y++NITIPSALI K+ G+++K +LSGG+MVN+ LDW E+VPHPD+RVEYELWTNSNDECG KCD  + F+K F+G AQILEKGG+TQFTPHYITWYCP  FTLS+QCKS
Sbjct:   14 LNLAMGRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPHPDERVEYELWTNSNDECGKKCDTQIEFLKNFKGAAQILEKGGHTQFTPHYITWYCPEAFTLSKQCKS 248          
BLAST of CF838828 vs. ExPASy Swiss-Prot
Match: VSR2_ARATH (Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.396e-91
Identity = 149/229 (65.07%), Postives = 187/229 (81.66%), Query Frame = 2
Query:  185 RFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKS 871
            RFVVEKN+L VTSPE I+G ++ A+GNFG+PQYGGSM+GAV YPK N+K C+ F DF ISF+++   LP FVLVDRGDC+F LK WNAQ+AGA+ +LVAD+  E LITMD PE++ S A Y++NITIPSAL+ +S G  +K +++ G+ V+++LDWREA+PHP+DRV YELWTNSNDECG KCD  + F+K F+G AQILEKGGYT+FTPHYITWYCP  F  SRQCK+
Sbjct:   24 RFVVEKNNLRVTSPESIRGVYECALGNFGVPQYGGSMSGAVVYPKTNQKACKNFDDFEISFRSRVAGLPTFVLVDRGDCYFTLKAWNAQRAGAATILVADNRPEQLITMDAPEDETSDADYLQNITIPSALVSRSLGSAIKTAIAHGDPVHISLDWREALPHPNDRVAYELWTNSNDECGSKCDAQIRFLKRFKGAAQILEKGGYTRFTPHYITWYCPEAFLASRQCKT 252          
BLAST of CF838828 vs. ExPASy Swiss-Prot
Match: VSR7_ARATH (Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 4.359e-77
Identity = 134/230 (58.26%), Postives = 169/230 (73.48%), Query Frame = 2
Query:  182 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKS 871
            +RFVVEK S+ V +PE+++  HD +I NFG+P YGG + G+V YP     GC  FG    +FK K    P  +L+DRG C+FALK W+AQ+AGA+AVLVAD+++E L+TMD+PEE   +  +IE +TIPS LIDKSFG+ L++    G+ + + LDWRE+VPHPD RVEYELWTNSNDECG +CD  M FVK F+G AQILEKGGYT FTPHYITW+CP  F  S  CKS
Sbjct:   26 ARFVVEKESISVLNPEEMRSKHDGSIANFGLPDYGGFLIGSVVYPDSKTDGCSAFGK---TFKPK-FPRPTILLLDRGGCYFALKAWHAQQAGAAAVLVADNVDEPLLTMDSPEESKDADGFIEKLTIPSVLIDKSFGDDLRQGFQKGKNIVIKLDWRESVPHPDKRVEYELWTNSNDECGARCDEQMDFVKNFKGHAQILEKGGYTAFTPHYITWFCPFQFINSPHCKS 251          
BLAST of CF838828 vs. ExPASy Swiss-Prot
Match: VSR6_ARATH (Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 5.892e-74
Identity = 128/229 (55.90%), Postives = 168/229 (73.36%), Query Frame = 2
Query:  185 RFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKS 871
            RF+VEK+S+ + +P  ++  HD+AI NFG+P YGG M G+V Y  +   GC  F     +FK K    P  +++DRG+C+FALKVWN Q++G +AVLVAD+++E LITMD+PEE   +  +IE + IPSALID SF  TLK++L  GE V + +DW E++PHPD+RVEYELWTN+NDECG +CD  M FVK F+G AQILEKGGY+ FTPHYITW+CP  +  S QCKS
Sbjct:   26 RFIVEKSSVTILNPLAMRSKHDAAIANFGVPNYGGYMIGSVVYAGQGAYGCDSFDK---TFKPK-FPRPTILIIDRGECYFALKVWNGQQSGVAAVLVADNVDEPLITMDSPEESKEADDFIEKLNIPSALIDFSFANTLKQALKKGEEVVLKIDWSESLPHPDERVEYELWTNTNDECGARCDEQMNFVKNFKGHAQILEKGGYSLFTPHYITWFCPKDYVSSNQCKS 250          
BLAST of CF838828 vs. ExPASy Swiss-Prot
Match: VSR5_ARATH (Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.832e-68
Identity = 123/230 (53.48%), Postives = 166/230 (72.17%), Query Frame = 2
Query:  182 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKSLSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKS 871
            SRF VEK+SL V +  ++   HD+AI NFG+P+YGG M G+V Y  ++  GC  F     +F  K    P  +L+DRG C FALK+WN Q++GA+AVL+AD+I E LITMDTP+++     +I+ + IPSALI +SFG++LKK+L  GE V + +DW E++P+PD+RVEYELW N+NDECGV CD  + F+K F+G AQILEKGGYT F PHYI+W CP    LS+QC++
Sbjct:   26 SRFFVEKSSLTVLNSWEMGAKHDAAIANFGLPKYGGFMIGSVVYAGQDAYGCNSFNK---TFNTK-SPYPKILLIDRGVCNFALKIWNGQQSGAAAVLLADNIVEPLITMDTPQDE--DPDFIDKVKIPSALILRSFGDSLKKALKRGEEVILKMDWSESIPNPDERVEYELWANTNDECGVHCDKQIDFIKNFKGMAQILEKGGYTLFRPHYISWVCPKELLLSKQCRT 249          
The following BLAST results are available for this feature:
BLAST of CF838828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VSR4_ARATH3.648e-11684.35Vacuolar-sorting receptor 4 OS=Arabidopsis thalian... [more]
VSR3_ARATH3.648e-11684.35Vacuolar-sorting receptor 3 OS=Arabidopsis thalian... [more]
VSR1_PEA6.439e-11383.62Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP... [more]
VSR1_ARATH9.980e-9868.09Vacuolar-sorting receptor 1 OS=Arabidopsis thalian... [more]
VSR2_ARATH1.396e-9165.07Vacuolar-sorting receptor 2 OS=Arabidopsis thalian... [more]
VSR7_ARATH4.359e-7758.26Vacuolar-sorting receptor 7 OS=Arabidopsis thalian... [more]
VSR6_ARATH5.892e-7455.90Vacuolar-sorting receptor 6 OS=Arabidopsis thalian... [more]
VSR5_ARATH2.832e-6853.48Vacuolar-sorting receptor 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06L14_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838828 ID=CF838828; Name=CF838828; organism=Citrus sinensis; type=EST; length=871bp
CGTCTGAAGCTGAAACTGAAACTTACCCACTTACATGTTCCAATCATTTG
ATCCAAAAATCCCAAATCCCCACCAAATCTTTGTCATTGTTTTTTTGACA
AAAATGGAGTCACACGGCTCAATAACTTTGAAGCTCTTTCTGGGGTTTCT
GATTTTGTCCTTAAATGTTCATACTTCGGTGTCGAGATTTGTCGTCGAGA
AAAACAGCTTGATGGTGACGTCACCGGAGAAGATTAAAGGGTCTCACGAC
AGTGCGATTGGCAACTTTGGGATTCCGCAATATGGGGGAAGCATGGCGGG
AGCTGTGACGTATCCTAAGGAGAATCGAAAGGGCTGCAGGGAATTTGGTG
ACTTCGGGATTTCGTTTAAGGCCAAGCCTGGAGCTTTGCCCAATTTCGTT
TTGGTCGATCGTGGAGATTGCTTCTTTGCCTTGAAGGTCTGGAATGCCCA
AAAGGCTGGTGCTTCTGCAGTGCTTGTTGCAGATGACATTGAGGAAGCAT
TAATAACAATGGACACACCTGAAGAGGATATTTCGTCAGCAAAATACATT
GAAAATATAACTATACCATCTGCACTTATTGATAAAAGTTTTGGTGAAAC
ATTAAAGAAATCACTCAGTGGTGGGGAAATGGTCAATGTGAATCTTGATT
GGAGAGAAGCTGTTCCACACCCTGATGATCGCGTGGAGTATGAGTTATGG
ACCAACAGCAATGACGAATGTGGGGTTAAATGTGACATGTTGATGGCATT
TGTGAAGGAATTTAGGGGTCCAGCACAGATACTTGAGAAAGGTGGCTACA
CTCAGTTCACCCCCCATTATATAACTTGGTACTGTCCTATGACGTTCACC
TTAAGCAGGCAGTGCAAGTCT
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