CF838829
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 2.139e-53 Identity = 126/211 (59.72%), Postives = 140/211 (66.35%), Query Frame = 1 Query: 25 GGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPR-KKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 621 GG M+DLDINQ S E GS D+EE GGP R KKLRLSKEQSRLLE KQKE LA +LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FGSLTE+NRRLQREVEELRAM+V PPTV+SPH+ +PLPAS L+MCPRCER+T GP V S+ AA +P P R PSAA Sbjct: 36 GGCNMRDLDINQPASGGEEEEFPM-------GSVEEDEEERGV----GGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAAT---GPPAVRPPPSSAAAAAPSPFHP----RRPSAA 228
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 2.139e-53 Identity = 126/211 (59.72%), Postives = 140/211 (66.35%), Query Frame = 1 Query: 25 GGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPR-KKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 621 GG M+DLDINQ S E GS D+EE GGP R KKLRLSKEQSRLLE KQKE LA +LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FGSLTE+NRRLQREVEELRAM+V PPTV+SPH+ +PLPAS L+MCPRCER+T GP V S+ AA +P P R PSAA Sbjct: 36 GGCNMRDLDINQPASGGEEEEFPM-------GSVEEDEEERGV----GGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAAT---GPPAVRPPPSSAAAAAPSPFHP----RRPSAA 228
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 4.043e-44 Identity = 104/186 (55.91%), Postives = 118/186 (63.44%), Query Frame = 1 Query: 1 SSSPFQQAGGSAMKD---LDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTA 516 SSSP G +D LD+N++PS + D+EE + PPRKKLRL++EQSRLLE KQKE LA L L+PRQ+EVWFQNRRARSKLKQTEMECEYLKRWFGSLTE+N RL REVEELRAMKVGP TV S AS+L+MCPRCERVT A Sbjct: 94 SSSPLSDEGSGGGRDQLRLDMNRLPSSED------------------GDDEEFSHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNS--------ASSLTMCPRCERVTPAA 253
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 2.149e-37 Identity = 101/192 (52.60%), Postives = 113/192 (58.85%), Query Frame = 1 Query: 1 SSSPFQQAGGS-AMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKV 540 S SP G M+D DINQ P + + G+ +E++S GG RKKLRL+KEQS LLE KQK++LAT LKL RQVEVWFQNRRARSKLK TEMECEYLKRWFGSL EQNRRLQ EVEELRA+K P S L+MCPRCERV T AVD V Sbjct: 18 SFSPSPSLGDHHGMRDFDINQTPKTEEDREWMI-------GATPHVNEDDSN---SGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALK-------------PSSTSALTMCPRCERV-TDAVDNDSNAV 185
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.912e-36 Identity = 97/218 (44.50%), Postives = 118/218 (54.13%), Query Frame = 1 Query: 1 SSSPFQQAGGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 621 SSSP AG M D + + D G G + DGG RKKLRLSKEQS LE KQK LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR +LTE+NRRLQ+E+ ELRA+K P + LPA+TLSMCP CERV + + + T+S+ +P G A S +AA Sbjct: 127 SSSPNNSAGSFPMDDFSGHGLGGNDAAPG----------GGGGDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMH------LPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAATSSSAAAA 328
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 6.912e-36 Identity = 97/218 (44.50%), Postives = 118/218 (54.13%), Query Frame = 1 Query: 1 SSSPFQQAGGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 621 SSSP AG M D + + D G G + DGG RKKLRLSKEQS LE KQK LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR +LTE+NRRLQ+E+ ELRA+K P + LPA+TLSMCP CERV + + + T+S+ +P G A S +AA Sbjct: 40 SSSPNNSAGSFPMDDFSGHGLGGNDAAPG----------GGGGDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMH------LPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAATSSSSAAA 241
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3) HSP 1 Score: 145.591 bits (366), Expect = 2.904e-34 Identity = 82/157 (52.23%), Postives = 100/157 (63.69%), Query Frame = 1 Query: 163 DGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQ 600 + G RKKLRLSK+QS LE KQK LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR SLTE+NRRLQ+EV+ELR +K P + LPA+TL+MCP CERV T+A + + ++L P PA Q Sbjct: 184 ENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQ------LPATTLTMCPSCERVATSAAQPSTSAAHNLCLSTSSLIPVKPRPAKQ 334
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.954e-34 Identity = 85/166 (51.20%), Postives = 111/166 (66.87%), Query Frame = 1 Query: 118 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPL-PASTLSMCPRCERVTTT--------AVDKGPTKVTTASS 555 G G D+E+ C +DG RKKLRLSK+QS +LE +QK LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR +LTE+NRRLQ+EV+ELRA+K ++SPH + P +TL+MCP CERV+ T A D+ + TTA++ Sbjct: 64 GGGGSDEEDGGC-GIDGS--RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALK-----LVSPHLYMNMSPPTTLTMCPSCERVSNTNNNSSAAAAADRRGIRTTTAAA 221
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 6.470e-34 Identity = 85/165 (51.52%), Postives = 110/165 (66.67%), Query Frame = 1 Query: 118 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPL-PASTLSMCPRCERVTTT--------AVDKGPTKVTTAS 552 G G D+E+ C +DG RKKLRLSK+QS +LE +QK LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR +LTE+NRRLQ+EV+ELRA+K ++SPH + P +TL+MCP CERV+ T A D+ + TTA+ Sbjct: 64 GGGGSDEEDGGC-GIDGS--RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALK-----LVSPHLYMNMSPPTTLTMCPSCERVSNTNNNSSAAAAADRRGIRTTTAA 220
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 8.450e-34 Identity = 83/164 (50.61%), Postives = 101/164 (61.59%), Query Frame = 1 Query: 118 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTT---TAVDKGPTKVTTASSTPAA 567 G G + + +G RKKLRLSKEQS LE KQK LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR +LTE+NRRL +E+ ELRA+K P + LPA+TLSMCP CERV + TA P T+ ++ P A Sbjct: 153 GGGGERSSSRASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMH------LPATTLSMCPSCERVASNPATASTSAPAAATSPAAAPTA 310 The following BLAST results are available for this feature:
BLAST of CF838829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
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Sequences
The
following sequences are available for this feature:
EST sequence >CF838829 ID=CF838829; Name=CF838829; organism=Citrus sinensis; type=EST; length=779bpback to top |