CF838829

Overview
NameCF838829
Unique NameCF838829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1281 contig Csv1_Contig1281:2..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSJ (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. japonica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.139e-53
Identity = 126/211 (59.72%), Postives = 140/211 (66.35%), Query Frame = 1
Query:   25 GGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPR-KKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 621
            GG  M+DLDINQ  S   E            GS   D+EE       GGP R KKLRLSKEQSRLLE           KQKE LA +LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FGSLTE+NRRLQREVEELRAM+V PPTV+SPH+ +PLPAS L+MCPRCER+T      GP  V    S+ AA +P    P    R PSAA
Sbjct:   36 GGCNMRDLDINQPASGGEEEEFPM-------GSVEEDEEERGV----GGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAAT---GPPAVRPPPSSAAAAAPSPFHP----RRPSAA 228          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX3_ORYSI (Homeobox-leucine zipper protein HOX3 OS=Oryza sativa subsp. indica GN=HOX3 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.139e-53
Identity = 126/211 (59.72%), Postives = 140/211 (66.35%), Query Frame = 1
Query:   25 GGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPR-KKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 621
            GG  M+DLDINQ  S   E            GS   D+EE       GGP R KKLRLSKEQSRLLE           KQKE LA +LKL+PRQVEVWFQNRRAR+KLKQTEMECEYLKR FGSLTE+NRRLQREVEELRAM+V PPTV+SPH+ +PLPAS L+MCPRCER+T      GP  V    S+ AA +P    P    R PSAA
Sbjct:   36 GGCNMRDLDINQPASGGEEEEFPM-------GSVEEDEEERGV----GGPHRPKKLRLSKEQSRLLEESFRLNHTLTPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAAT---GPPAVRPPPSSAAAAAPSPFHP----RRPSAA 228          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: ATB17_ARATH (Homeobox-leucine zipper protein ATHB-17 OS=Arabidopsis thaliana GN=ATHB-17 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.043e-44
Identity = 104/186 (55.91%), Postives = 118/186 (63.44%), Query Frame = 1
Query:    1 SSSPFQQAGGSAMKD---LDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTA 516
            SSSP    G    +D   LD+N++PS +                    D+EE   +    PPRKKLRL++EQSRLLE           KQKE LA  L L+PRQ+EVWFQNRRARSKLKQTEMECEYLKRWFGSLTE+N RL REVEELRAMKVGP TV S        AS+L+MCPRCERVT  A
Sbjct:   94 SSSPLSDEGSGGGRDQLRLDMNRLPSSED------------------GDDEEFSHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEENHRLHREVEELRAMKVGPTTVNS--------ASSLTMCPRCERVTPAA 253          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: ATHBX_ARATH (Homeobox-leucine zipper protein ATHB-X OS=Arabidopsis thaliana GN=ATHB-X PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.149e-37
Identity = 101/192 (52.60%), Postives = 113/192 (58.85%), Query Frame = 1
Query:    1 SSSPFQQAGGS-AMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKV 540
            S SP    G    M+D DINQ P  + +            G+    +E++S     GG  RKKLRL+KEQS LLE           KQK++LAT LKL  RQVEVWFQNRRARSKLK TEMECEYLKRWFGSL EQNRRLQ EVEELRA+K             P   S L+MCPRCERV T AVD     V
Sbjct:   18 SFSPSPSLGDHHGMRDFDINQTPKTEEDREWMI-------GATPHVNEDDSN---SGGRRRKKLRLTKEQSHLLEESFIQNHTLTPKQKKDLATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRWFGSLKEQNRRLQIEVEELRALK-------------PSSTSALTMCPRCERV-TDAVDNDSNAV 185          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.912e-36
Identity = 97/218 (44.50%), Postives = 118/218 (54.13%), Query Frame = 1
Query:    1 SSSPFQQAGGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 621
            SSSP   AG   M D   + +   D              G G       +    DGG  RKKLRLSKEQS  LE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR   +LTE+NRRLQ+E+ ELRA+K   P  +       LPA+TLSMCP CERV + +     +   T+S+     +P  G  A  S   +AA
Sbjct:  127 SSSPNNSAGSFPMDDFSGHGLGGNDAAPG----------GGGGDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMH------LPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAATSSSAAAA 328          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.912e-36
Identity = 97/218 (44.50%), Postives = 118/218 (54.13%), Query Frame = 1
Query:    1 SSSPFQQAGGSAMKDLDINQVPSEDTEXXXXXXXXXXXXGSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQSR*PSAA 621
            SSSP   AG   M D   + +   D              G G       +    DGG  RKKLRLSKEQS  LE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR   +LTE+NRRLQ+E+ ELRA+K   P  +       LPA+TLSMCP CERV + +     +   T+S+     +P  G  A  S   +AA
Sbjct:   40 SSSPNNSAGSFPMDDFSGHGLGGNDAAPG----------GGGGDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMH------LPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAATSSSSAAA 241          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.904e-34
Identity = 82/157 (52.23%), Postives = 100/157 (63.69%), Query Frame = 1
Query:  163 DGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTTTAVDKGPTKVTTASSTPAALSPKVGTPALQ 600
            + G  RKKLRLSK+QS  LE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR   SLTE+NRRLQ+EV+ELR +K   P  +       LPA+TL+MCP CERV T+A     +       + ++L P    PA Q
Sbjct:  184 ENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQ------LPATTLTMCPSCERVATSAAQPSTSAAHNLCLSTSSLIPVKPRPAKQ 334          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSI (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. indica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.954e-34
Identity = 85/166 (51.20%), Postives = 111/166 (66.87%), Query Frame = 1
Query:  118 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPL-PASTLSMCPRCERVTTT--------AVDKGPTKVTTASS 555
            G G  D+E+  C  +DG   RKKLRLSK+QS +LE           +QK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR   +LTE+NRRLQ+EV+ELRA+K     ++SPH    + P +TL+MCP CERV+ T        A D+   + TTA++
Sbjct:   64 GGGGSDEEDGGC-GIDGS--RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALK-----LVSPHLYMNMSPPTTLTMCPSCERVSNTNNNSSAAAAADRRGIRTTTAAA 221          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX17_ORYSJ (Homeobox-leucine zipper protein HOX17 OS=Oryza sativa subsp. japonica GN=HOX17 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.470e-34
Identity = 85/165 (51.52%), Postives = 110/165 (66.67%), Query Frame = 1
Query:  118 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPL-PASTLSMCPRCERVTTT--------AVDKGPTKVTTAS 552
            G G  D+E+  C  +DG   RKKLRLSK+QS +LE           +QK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CE+LKR   +LTE+NRRLQ+EV+ELRA+K     ++SPH    + P +TL+MCP CERV+ T        A D+   + TTA+
Sbjct:   64 GGGGSDEEDGGC-GIDGS--RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELRALK-----LVSPHLYMNMSPPTTLTMCPSCERVSNTNNNSSAAAAADRRGIRTTTAA 220          
BLAST of CF838829 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.450e-34
Identity = 83/164 (50.61%), Postives = 101/164 (61.59%), Query Frame = 1
Query:  118 GSGSMDDEEESCINVDGGPPRKKLRLSKEQSRLLE-----------KQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLSMCPRCERVTT---TAVDKGPTKVTTASSTPAA 567
            G G       +  + +G   RKKLRLSKEQS  LE           KQK  LA QL L+PRQVEVWFQNRRAR+KLKQTE++CEYLKR   +LTE+NRRL +E+ ELRA+K   P  +       LPA+TLSMCP CERV +   TA    P   T+ ++ P A
Sbjct:  153 GGGGERSSSRASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMH------LPATTLSMCPSCERVASNPATASTSAPAAATSPAAAPTA 310          
The following BLAST results are available for this feature:
BLAST of CF838829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
HOX3_ORYSJ2.139e-5359.72Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
HOX3_ORYSI2.139e-5359.72Homeobox-leucine zipper protein HOX3 OS=Oryza sati... [more]
ATB17_ARATH4.043e-4455.91Homeobox-leucine zipper protein ATHB-17 OS=Arabido... [more]
ATHBX_ARATH2.149e-3752.60Homeobox-leucine zipper protein ATHB-X OS=Arabidop... [more]
HOX11_ORYSJ6.912e-3644.50Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI6.912e-3644.50Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HAT14_ARATH2.904e-3452.23Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
HOX17_ORYSI4.954e-3451.20Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX17_ORYSJ6.470e-3451.52Homeobox-leucine zipper protein HOX17 OS=Oryza sat... [more]
HOX27_ORYSJ8.450e-3450.61Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06L15_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838829 ID=CF838829; Name=CF838829; organism=Citrus sinensis; type=EST; length=779bp
TCATCATCACCCTTTCAACAAGCCGGAGGTTCTGCGATGAAGGATTTGGA
CATAAACCAAGTACCATCAGAAGATACTGAATGGAATAATTGGAACACAG
CAACAGCAACAACAACAGGATCAGGAAGCATGGACGATGAAGAAGAGAGC
TGCATCAACGTTGACGGCGGCCCTCCTCGCAAAAAGCTTCGCCTCTCCAA
AGAACAGTCTCGTCTTCTCGAAAAGCAGAAAGAAGAACTGGCTACGCAGT
TGAAGCTGAAGCCACGTCAAGTTGAAGTCTGGTTTCAGAATCGTAGGGCC
AGGAGCAAGCTGAAGCAAACGGAGATGGAATGCGAGTACTTGAAGAGATG
GTTTGGTTCATTGACTGAACAAAACAGGAGGCTGCAAAGGGAAGTGGAGG
AGCTCAGGGCTATGAAGGTGGGCCCACCCACCGTGATCTCTCCCCACAGT
TGTGAGCCACTCCCGGCATCAACCCTATCAATGTGTCCACGGTGTGAGCG
CGTGACCACCACCGCCGTTGACAAGGGCCCCACCAAGGTCACCACCGCCT
CCTCCACTCCCGCGGCATTGTCTCCTAAAGTCGGGACGCCGGCCCTCCAG
TCACGGTAGCCTTCGGCGGCCTGATGGAAAGTTAAACGTGGCAAAACATT
AATCAAAAGCAAAAGGAGAAATTAGTTTTAGAGGATGTTCATAGGAAAAG
AAATATGCAAGTGTGCATGCAAGATACCAATGAAGATAAGATACTATCAT
TGATATATATGTGTGGTATCTGATCTGCT
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