CF838842

Overview
NameCF838842
Unique NameCF838842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838842 vs. ExPASy Swiss-Prot
Match: ARR2_ARATH (Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 3.130e-73
Identity = 146/205 (71.22%), Postives = 161/205 (78.54%), Query Frame = 2
Query:  182 DQFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISEVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQS-GSVE----ERDRQPKPSEEAD-YSSSANEGNWRTS--XXXXXXXXXXXXXXXTSTLKKPRVIWSVELH 772
            D FPA LRVLVVDDDPTCL ILE+ML TCLY VTKCNRAE AL +LR NKNG+DIVIS+VHMPDMDGFKLLE VGLEMDLPVIMMSADDSK VV+KGVTHGA DYLIKPVRIEALKNIWQHVVRK++NEW   E S GS+E    +RDRQ +  E+AD  SSS NEGN R+S                 +S+LKKPRV+WSVELH
Sbjct:   22 DPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEEVDDQGDDKEDSSSLKKPRVVWSVELH 226          
BLAST of CF838842 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.315e-71
Identity = 145/217 (66.82%), Postives = 163/217 (75.12%), Query Frame = 2
Query:  182 DQFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISEVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEER-DRQPKP------------SEEA--DYSSSANEG-NWRTS----XXXXXXXXXXXXXXXTSTLKKPRVIWSVELH 772
            + FP+GLRVLVVDDDPTCL ILE+MLRTCLYEVTKCNRAE+AL +LR NK+G+DIVIS+VHMPDMDGFKLLE VGLEMDLPVIMMSADDSK VV+KGVTHGA DYLIKPVR+EALKNIWQHVVRKR++EW   E SGS+EE  +RQ +              E+A  D SSS NEG NWR+S                    S LKKPRV+WSVELH
Sbjct:   31 EMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGNNWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWSVELH 247          
BLAST of CF838842 vs. ExPASy Swiss-Prot
Match: ARR12_ARATH (Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.785e-52
Identity = 109/200 (54.50%), Postives = 130/200 (65.00%), Query Frame = 2
Query:  182 DQFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISEVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEERDRQPKPSEEADYSSSANEGNW---RTSXXXXXXXXXXXXXXXTSTLKKPRVIWSVELH 772
            DQFP G+RVL VDDD TCL+ILE +LR C Y VT  N+A+ AL++LR NKN +D+VIS+V MPDMDGFKLLE VGLEMDLPVIM+SA    + VMKGVTHGACDYL+KPVRIE LKNIWQHVVR R +     +  GS    D++     E   +S  N G     R                 +   KK RV+W+VELH
Sbjct:   11 DQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVRSRFD-----KNRGSNNNGDKRDGSGNEGVGNSDPNNGKGNRKRKDQYNEDEDEDRDDNDDSCAQKKQRVVWTVELH 205          
BLAST of CF838842 vs. ExPASy Swiss-Prot
Match: ARR10_ARATH (Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.785e-52
Identity = 109/201 (54.23%), Postives = 136/201 (67.66%), Query Frame = 2
Query:  182 DQFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISEVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRK---RKNEWKDLEQSGSVEERDRQPKPS-EEADYSSSANEGNWRTSXXXXXXXXXXXXXXXTSTLKKPRVIWSVELH 772
            DQFP G+RVL VDDD TCLRIL+ +L+ C Y VT  N+A+ AL++LR NKN +D+VIS+V MPDMDGFKLLE VGLEMDLPVIM+SA    + VMKGV HGACDYL+KPVRIE LKNIWQHVVRK   +KN+      SG+ ++ +R+ K   EE +     N+ +  T+                   KKPRV+W+ ELH
Sbjct:   11 DQFPVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVVRKSKLKKNKSNVSNGSGNCDKANRKRKEQYEEEEEEERGNDNDDPTAQ------------------KKPRVLWTHELH 193          
BLAST of CF838842 vs. ExPASy Swiss-Prot
Match: ARR11_ARATH (Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.723e-50
Identity = 107/197 (54.31%), Postives = 129/197 (65.48%), Query Frame = 2
Query:  191 PAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISEVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEERDRQPKPSEEADYSSSANE---GNWRTSXXXXXXXXXXXXXXXTSTLKKPRVIWSVELH 772
            P GLRVLVVDDDPT L+ILEKML+ C YEVT C  A  AL +LR  K+GYDIVIS+V+MPDMDGFKLLE VGLE+DLPVIMMS D     VMKGV HGACDYL+KP+R++ LK IWQHV+RK+  E +D+E  G     D   +  +EA +     +   G  R                 +S+ KK RV+WS ELH
Sbjct:    8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVLRKKLQEVRDIEGCGYEGGADWITR-YDEAHFLGGGEDVSFGKKRKDFDFEKKLLQDESDPSSSSSKKARVVWSFELH 203          
BLAST of CF838842 vs. ExPASy Swiss-Prot
Match: ARR14_ARATH (Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 9.489e-46
Identity = 100/208 (48.08%), Postives = 132/208 (63.46%), Query Frame = 2
Query:  182 DQFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISEVHMPDMDGFKLLEQVGL-EMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEERDRQ----------PKPSEEADYSSSANEGNWRTSXXXXXXXXXXXXXXXTSTLKKPRVIWSVELH 772
            DQFP+GLR+LVVDDD +CL ILEKML   +Y+VT C++A++AL +LR  K+ +D+V+S+VHMP M+G+ LL+QVGL EMDLPVIMMS D     VM G+ HGACDYLIKP+R E LKNIWQHVVR++    K+L  S ++E+               + SEE+       +   + S                S  KK RV+WS+ELH
Sbjct:    5 DQFPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVVRRKCVMKKELRSSQALEDNKNSGSLETVVVSVSECSEESLMKCRNKKKKKKRSVDRDDNEDDLLLDPGNS--KKSRVVWSIELH 210          
BLAST of CF838842 vs. ExPASy Swiss-Prot
Match: ARR18_ARATH (Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.709e-45
Identity = 100/202 (49.50%), Postives = 126/202 (62.38%), Query Frame = 2
Query:  182 DQFPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISEVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDL---EQSGSV--EERDRQPKPSEEADYSSSANEGNWRTSXXXXXXXXXXXXXXXTSTLKKPRVIWSVELH 772
            D+FP G+RVL VDD+PTCLR LE++L  C Y VTK   +  AL+MLR N N +D+VIS+V MPD DGFKLLE +GLEMDLPVIM+SA      VMKG+ HGACDYL+KPV ++ L+NIW HVV+K    +  L    +S SV    R R+ K ++  D   S  E +                   + T KKPRV+WS ELH
Sbjct:   12 DKFPVGMRVLAVDDNPTCLRKLEELLLRCKYHVTKTMESRKALEMLRENSNMFDLVISDVEMPDTDGFKLLE-IGLEMDLPVIMLSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWHHVVKKNIKSYAKLLPPSESDSVPSASRKRKDKVNDSGDEDDSDREED--------DGEGSEQDGDGSGTRKKPRVVWSQELH 204          
BLAST of CF838842 vs. ExPASy Swiss-Prot
Match: APRR4_ARATH (Putative two-component response regulator-like APRR4 OS=Arabidopsis thaliana GN=APRR4 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.165e-27
Identity = 76/206 (36.89%), Postives = 115/206 (55.83%), Query Frame = 2
Query:  188 FPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISEVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKN---------EWKDLEQSGSV-EERDRQPKPSEEAD-YSSSANEGNWRTSXXXXXXXXXXXXXXXTSTLKKPRVIWSVELH 772
            FP GLRVLV D+DP+ L ILE+ L+   Y+VT CN    A+  LR ++N +D+ + +V+  + D F+ L ++G EMDLP+I++S DDS + V K + +GA DYLIKP+R E L+ +++H+V+K +          E    E+S SV +   R P  S+ +    +  NE +                    S+ KK RV+W  ELH
Sbjct:   38 FPEGLRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNNAEGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLVKKMRERRSVVTGEAEKAAGEKSSSVGDSTIRNPNKSKRSSCLEAEVNEED----------RHDHNDRACASSAKKRRVVWDEELH 233          
BLAST of CF838842 vs. ExPASy Swiss-Prot
Match: EHD1_ORYSJ (Two-component response regulator EHD1 OS=Oryza sativa subsp. japonica GN=EHD1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 67/202 (33.17%), Postives = 103/202 (50.99%), Query Frame = 2
Query:  188 FPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISEVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEERDRQPK-----PSEEADYSSSANEGNWRTSXXXXXXXXXXXXXXXTS--TLKKPRVIWSVELH 772
            +P GLRVLV+DDD + L ++E +L  C Y+VT       A+  +  N    D+VIS+   P  DG  +L++V  +  +P ++M++      VMK V +GA D+L+KPVRIE L NIWQH+ RK+  + K+    G++E+    P       +  A   S+A E +                   T    L K R+ W+ +LH
Sbjct:    7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLH 208          
BLAST of CF838842 vs. ExPASy Swiss-Prot
Match: EHD1_ORYSI (Two-component response regulator EHD1 OS=Oryza sativa subsp. indica PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 67/202 (33.17%), Postives = 103/202 (50.99%), Query Frame = 2
Query:  188 FPAGLRVLVVDDDPTCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISEVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEERDRQPK-----PSEEADYSSSANEGNWRTSXXXXXXXXXXXXXXXTS--TLKKPRVIWSVELH 772
            +P GLRVLV+DDD + L ++E +L  C Y+VT       A+  +  N    D+VIS+   P  DG  +L++V  +  +P ++M++      VMK V +GA D+L+KPVRIE L NIWQH+ RK+  + K+    G++E+    P       +  A   S+A E +                   T    L K R+ W+ +LH
Sbjct:    7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLH 208          
The following BLAST results are available for this feature:
BLAST of CF838842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ARR2_ARATH3.130e-7371.22Two-component response regulator ARR2 OS=Arabidops... [more]
ARR1_ARATH1.315e-7166.82Two-component response regulator ARR1 OS=Arabidops... [more]
ARR12_ARATH6.785e-5254.50Two-component response regulator ARR12 OS=Arabidop... [more]
ARR10_ARATH6.785e-5254.23Two-component response regulator ARR10 OS=Arabidop... [more]
ARR11_ARATH3.723e-5054.31Two-component response regulator ARR11 OS=Arabidop... [more]
ARR14_ARATH9.489e-4648.08Two-component response regulator ARR14 OS=Arabidop... [more]
ARR18_ARATH4.709e-4549.50Two-component response regulator ARR18 OS=Arabidop... [more]
APRR4_ARATH1.165e-2736.89Putative two-component response regulator-like APR... [more]
EHD1_ORYSJ3.174e-2533.17Two-component response regulator EHD1 OS=Oryza sat... [more]
EHD1_ORYSI3.174e-2533.17Two-component response regulator EHD1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838842 ID=CF838842; Name=CF838842; organism=Citrus sinensis; type=EST; length=774bp
CTTCAAGCTTCCCCTTAAGCCATGTCTTCTTCAACTTCAATCTCTTTAAA
CCTATTTTTTCTTCTTAATATTTAACTCAAATCTCTCTTCTATCTCTCTA
ATTCTTTGCGTATCTCATCTGGGTTCTTTGAATTTCGAACTGGGATCCAT
GTCACCGGCTAGTTCAAGTGTTGCTGTTTCCGATCAGTTTCCGGCTGGCT
TACGTGTCCTTGTTGTTGATGATGATCCTACTTGTCTTAGGATCTTGGAA
AAGATGCTTAGGACATGTCTTTATGAAGTTACAAAATGCAATCGAGCAGA
GATTGCTTTGGATATGCTTCGAACGAACAAGAATGGGTACGACATTGTTA
TCAGTGAGGTTCATATGCCAGATATGGATGGATTCAAACTCCTTGAGCAG
GTCGGGCTGGAGATGGACCTGCCGGTTATCATGATGTCTGCGGATGATAG
CAAACAAGTTGTCATGAAAGGTGTTACTCACGGTGCTTGTGATTATTTAA
TTAAGCCAGTTCGAATTGAGGCACTGAAGAACATATGGCAGCATGTGGTT
CGGAAGAGGAAGAACGAGTGGAAGGACTTGGAGCAGTCAGGAAGTGTGGA
AGAGCGAGATCGGCAACCAAAACCATCTGAAGAAGCGGATTATTCTTCCT
CAGCAAATGAAGGAAATTGGAGAACCTCAAAGAGGAGGAAAGACGAGGAA
GAAGAAATGGAAGAGAGGGATGATACATCCACTTTAAAGAAGCCGCGTGT
AATTTGGTCAGTTGAGCTCCATCA
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