CF838847

Overview
NameCF838847
Unique NameCF838847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF838847 vs. ExPASy Swiss-Prot
Match: CLCF_ARATH (Chloride channel protein CLC-f OS=Arabidopsis thaliana GN=CLC-F PE=2 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.435e-85
Identity = 174/306 (56.86%), Postives = 204/306 (66.67%), Query Frame = 2 
Query:   35 SDERRPLRSSNQEDL-----ESAPDSPSNRTSTPSAAGGIKDLFKQLDRRFS--DRRITFK------------DPPLSHSRSSSFDH--------HNYVDARDS-------LTESAPPEWXXXXXXXXXXXXXXXXVAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQSSSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLRAENSPPFT 850
            +++R  LRS++ +++     E   D  S   +  S AGG++DLFK +DRRFS   RR++FK            +P  S + S++ +         H+  D  D        L +SAPPEW                VA FNKGVH+IHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEIL+QI+QS+S  RQG D +AG++P IKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGF+LMMENNRER+I                  VAGCFFAIETVLRPLRAENSPPFT
Sbjct:   10 NEDRHLLRSTDGDEVGIGGGEGDLDVESQSPAIRSGAGGVRDLFKHIDRRFSLSGRRLSFKRMENIRVDRERHNPSSSSAFSAAGEEDGGGISNLHSVDDRNDEYGFDEEVLGDSAPPEWALLLIGCLIGVAAGICVAGFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILDQIRQSNSSQRQGLDFLAGIYPVIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFALMMENNRERRIALTAAGAASGIASGFNAAVAGCFFAIETVLRPLRAENSPPFT 315
[Close]
BLAST of CF838847 vs. ExPASy Swiss-Prot
Match: CLCE_ARATH (Chloride channel protein CLC-e OS=Arabidopsis thaliana GN=CLC-E PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.717e-25
Identity = 66/175 (37.71%), Postives = 95/175 (54.29%), Query Frame = 2 
Query:  341 VAFFNKGVHIIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLLEILNQIKQS---------SSLDRQGFDLVAGVFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLRAENS 838
            V  FN  VH++ +++W G P+ GA+WLR   +   W R++L+P  GG++V        ILNQ+++S         SSLDR    + A + P +K + A VTLGTG SLGPEGPSV+IG S A G + +   + +                     VAGCFFA+E+VL P  + +S
Sbjct:   91 VVLFNNCVHLLRDFSWDGIPDRGASWLREAPIGSNWLRVILVPTIGGLVV-------SILNQLRESAGKSTGDSHSSLDR----VKAVLRPFLKTVAACVTLGTGNSLGPEGPSVEIGASIAKGVNSLFNKSPQTGFSLLAAGSAAGISSGFNAAVAGCFFAVESVLWPSSSTDS 254
The following BLAST results are available for this feature:
BLAST of CF838847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CLCF_ARATH1.435e-8556.86Chloride channel protein CLC-f OS=Arabidopsis thal... [more]
CLCE_ARATH3.717e-2537.71Chloride channel protein CLC-e OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06M11_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838847 ID=CF838847; Name=CF838847; organism=Citrus sinensis; type=EST; length=852bp
AAAATAATCACATTTTCGAAAGCAGAAAATGTCAAGCGATGAGAGGCGTC
CGCTGAGATCGTCGAATCAAGAAGACTTAGAATCAGCTCCAGATTCGCCG
TCGAATAGAACCAGTACTCCTTCTGCGGCAGGCGGAATCAAAGATCTGTT
TAAGCAATTGGATCGTCGATTTTCCGATCGCCGCATAACTTTCAAAGATC
CTCCTCTTTCGCATTCGCGTTCGTCGTCTTTCGATCACCATAATTATGTG
GACGCCCGTGATTCTCTGACGGAAAGTGCCCCTCCTGAGTGGGCGTTGCT
TCTCATCGGTTGCCTTCTCGGCCTCGCATCCGGTTTGTGCGTTGCCTTCT
TCAATAAAGGGGTTCATATTATACATGAATGGGCCTGGGCGGGTACTCCG
AATGAGGGTGCTGCTTGGCTTCGATTACAGAGACTGGCGGACACTTGGCA
TCGGATTTTACTCATTCCAGTGACGGGAGGAGTAATTGTTGGAATGATGC
ATGGATTACTTGAGATATTAAATCAAATAAAGCAGTCGAGTTCTTTGGAT
AGACAAGGTTTTGATTTGGTTGCCGGAGTGTTTCCTACAATAAAGGCCAT
TCAGGCTGCTGTTACTTTAGGTACTGGTTGTTCTTTGGGTCCTGAAGGTC
CTAGTGTTGATATTGGAAAATCATGTGCCAATGGTTTTTCTTTAATGATG
GAAAATAACAGAGAAAGGAAAATTGCGCTTGTTGCAGCTGGTGCTGCTTC
TGGAATTGCTTCAGGTTTTAATGCGGCTGTAGCCGGTTGTTTCTTTGCCA
TTGAAACTGTGTTAAGGCCTCTTCGGGCTGAAAACTCACCCCCATTTACA
AC
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