CF838898

Overview
NameCF838898
Unique NameCF838898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1285 contig Csv1_Contig1285:2..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838898 vs. ExPASy Swiss-Prot
Match: NAC78_ARATH (NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.576e-44
Identity = 86/161 (53.42%), Postives = 114/161 (70.81%), Query Frame = 3
Query:   60 SMESLPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDSSTKPSQAAFVLCRLFRK 542
            S+ SL  GFRF PTDEEL+ +YL+ K+  +  + + I   D+ K EPWDLP  S +K+ D EW+FF   D+KY NG ++NRATE GYWK TGKDR IR+     +  +GMKKTLV+++GRAP+GERTNW+MHEYR + EDL  +     Q A+VLCR+F+K
Sbjct:    5 SVTSLAPGFRFHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRN----GSRVVGMKKTLVYHKGRAPRGERTNWVMHEYRLSDEDLKKAGV--PQEAYVLCRIFQK 159          
BLAST of CF838898 vs. ExPASy Swiss-Prot
Match: NAC98_ARATH (Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.334e-43
Identity = 90/157 (57.32%), Postives = 110/157 (70.06%), Query Frame = 3
Query:   72 LPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDSSTKPSQAAFVLCRLFRK 542
            LP GFRF PTDEELI HYL  K+         I E+D+ K EPW LPG +  K  + EW+FF  RDRKYP GLR+NRATEAGYWKATGKDR I S K  T A +GMKKTLVFY+GRAPKGE++NW+MHEYR   +      ++ S+  +V+ R+F+K
Sbjct:   17 LPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRA--KMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSK--TCALVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQK 169          
BLAST of CF838898 vs. ExPASy Swiss-Prot
Match: NAC74_ORYSJ (NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.475e-42
Identity = 85/157 (54.14%), Postives = 105/157 (66.88%), Query Frame = 3
Query:   72 LPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDSSTKPSQAAFVLCRLFRK 542
            LP GF F P D ELI+HYL+ KI+G+  E E+IPE+D+ K EPWDLP    + T+D +W FF  RDRKYPNG RSNRAT AGYWK+TGKDR I+  K      IG KKTLVF+ GR P G RT WIMHEY     +    +    + A+VLCR+ ++
Sbjct:    9 LPPGFGFHPKDTELISHYLKKKIHGQKIEYEIIPEVDIYKHEPWDLPAKCDVPTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAIKMGK----QTIGTKKTLVFHEGRPPTGRRTEWIMHEYYIDEREC--QACPDMKDAYVLCRITKR 159          
BLAST of CF838898 vs. ExPASy Swiss-Prot
Match: NAC7_ARATH (NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 2.130e-41
Identity = 80/162 (49.38%), Postives = 114/162 (70.37%), Query Frame = 3
Query:   60 SMESLPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVI-KTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDSSTKPSQAAFVLCRLFRK 542
            S   +P GFRF PTDEEL+++YLR K+  +  E++ I +ID+ K+EPWDL  L  I   E  +W+FF  +D+KYP G R+NRAT+AG+WKATG+D+ I  R    ++ IGM+KTLVFY+GRAP G++++WIMHEYR       D +  P +  +V+CR+F+K
Sbjct:    3 SFSHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLR----HSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE----TDENGTPQEEGWVVCRVFKK 156          
BLAST of CF838898 vs. ExPASy Swiss-Prot
Match: NAC68_ORYSJ (NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.130e-41
Identity = 95/221 (42.99%), Postives = 127/221 (57.47%), Query Frame = 3
Query:   69 SLPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDSSTKPSQA--AFVLCRLFRKPE--EKVDVLKYDEVEQTESPDTNKSSLDDTSSDLVQETAMSD-YVTPNAVLPVESCGNSH 716
            +LP GFRF PTDEEL+ HYL  K+  +   V +I E+D+ KL+PWDLP  ++   +  EW+FF PRDRKYPNG R NRA   GYWKATG D+ +  +  G+   +G+KK LVFY G+AP+G +T+WIMHEYR    D      K SQ    +VLCRL+ K    EKV + + D      +   N    +    D      MSD + T ++ +   S G  H
Sbjct:   20 NLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFGRK--EWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPK--GSARTVGIKKALVFYSGKAPRGVKTDWIMHEYRLADADRAPGGKKGSQKLDEWVLCRLYNKKNNWEKVKLEQQDVASVAAAAPRNHHHQNGEVMDAAAADTMSDSFQTHDSDIDNASAGLRH 236          
BLAST of CF838898 vs. ExPASy Swiss-Prot
Match: NAC29_ARATH (NAC domain-containing protein 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.093e-41
Identity = 87/171 (50.88%), Postives = 114/171 (66.67%), Query Frame = 3
Query:   48 MPVISMESLPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTE--DPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDSSTKPSQA----AFVLCRLFRK 542
            M V S  +LP GFRF PTDEELI +YLR +   +   V +IPE+D+ K +PW LP     KTE  + EW+FF PR+RKYPNG+R NRA  +GYWKATG D+ I S  +     +G+KK LVFY+GR PKG +T+WIMHEYR    D   +STK + +     +VLCR+++K
Sbjct:    1 MEVTSQSTLPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPE----KTEFGENEWYFFSPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSN----VGVKKALVFYKGRPPKGIKTDWIMHEYR--LHDSRKASTKRNGSMRLDEWVLCRIYKK 161          
BLAST of CF838898 vs. ExPASy Swiss-Prot
Match: NAC54_ARATH (Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.057e-40
Identity = 83/157 (52.87%), Postives = 109/157 (69.43%), Query Frame = 3
Query:   72 LPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDSSTKPSQAAFVLCRLFRK 542
            +P GFRF PTDEELI +YL  K+   +     I ++D+ K EPW+LP  +  K  + EW+FF  RDRKYP GLR+NRATEAGYWKATGKDR I+S K  T + +GMKKTLVFY+GRAPKGE++ W+MHEYR   +      +  ++  +VLC++  K
Sbjct:   20 MPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKA--KMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSK--TKSLLGMKKTLVFYKGRAPKGEKSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLK 172          
BLAST of CF838898 vs. ExPASy Swiss-Prot
Match: NAC66_ARATH (NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.075e-40
Identity = 90/237 (37.97%), Postives = 135/237 (56.96%), Query Frame = 3
Query:   54 VISMESLPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVI-KTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDS-----------STKPSQAAFVLCRLFRKPEEKVDVLKYDEVEQTESPDTNKSSLDDTSSDLVQETAMSDYVTPNAVLPVESC-GNSHITS 725
            V     +P GFRF PT+EEL+ +YLR KI+    +++VIP+ID+ KLEPWD+  +  I  T   +W+F+  +D+KYP G R+NRAT  G+WKATG+D+TI +        IGM+KTLVFY+GRAP G++++WIMHEYR     L+ S               S   +V+CR+F+K     +++        ++P  N+ +++     + Q       + P   LP   C  N+ ITS
Sbjct:    5 VNGQSQVPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKIGTTPQNDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIYT----NGDRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDESVLISSCGDHDVNVETCDVIGSDEGWVVCRVFKKNNLCKNMISSSPASSVKTPSFNEETIEQLLEVMGQSCKGEIVLDPFLKLPNLECHNNTTITS 237          
BLAST of CF838898 vs. ExPASy Swiss-Prot
Match: NAC9_ARATH (Putative NAC domain-containing protein 9 OS=Arabidopsis thaliana GN=NAC009 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.246e-40
Identity = 78/162 (48.15%), Postives = 109/162 (67.28%), Query Frame = 3
Query:   81 GFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYR--------PTREDLLDSSTKPSQAAFVLCRLFRK 542
            GFRF PTDEEL++ YL+ K+      +E+I ++D+ K +PWDLP  ++  T + EW+F+CPRDRKY N  R NR T AG+WKATG DR I S +   N CIG+KK+LVFY+GRA KG +T+W+MHE+R        P  +   DS   P+  ++ +CR+F+K
Sbjct:   19 GFRFHPTDEELVSFYLKRKVQHNPLSIELIRQLDIYKYDPWDLPKFAM--TGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSSEG--NKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLSEPSPPSKRFFDSPVSPND-SWAICRIFKK 175          
BLAST of CF838898 vs. ExPASy Swiss-Prot
Match: NAC2_ARATH (NAC domain-containing protein 2 OS=Arabidopsis thaliana GN=NAC002 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 6.851e-40
Identity = 84/159 (52.83%), Postives = 104/159 (65.41%), Query Frame = 3
Query:   72 LPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKLEPWDLPGLSVIKTEDPEWFFFCPRDRKYPNGLRSNRATEAGYWKATGKDRTIRSRKAGTNACIGMKKTLVFYRGRAPKGERTNWIMHEYRPTREDLLDSSTKPSQAA--FVLCRLFRK 542
            LP GFRF PTDEEL+ HYL  K   +   V +I EID+ K +PW+LPGL++    + EW+FF PRDRKYPNG R NR+  +GYWKATG D+ I     G    +G+KK LVFY G+APKGE+TNWIMHEYR    D      K S     +VLCR++ K
Sbjct:    7 LPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPGLALYG--EKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATGADKPI-----GLPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSVRKKKNSLRLDDWVLCRIYNK 158          
The following BLAST results are available for this feature:
BLAST of CF838898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
NAC78_ARATH1.576e-4453.42NAC domain-containing protein 78 OS=Arabidopsis th... [more]
NAC98_ARATH1.334e-4357.32Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thal... [more]
NAC74_ORYSJ1.475e-4254.14NAC domain-containing protein 74 OS=Oryza sativa s... [more]
NAC7_ARATH2.130e-4149.38NAC domain-containing protein 7 OS=Arabidopsis tha... [more]
NAC68_ORYSJ2.130e-4142.99NAC domain-containing protein 68 OS=Oryza sativa s... [more]
NAC29_ARATH8.093e-4150.88NAC domain-containing protein 29 OS=Arabidopsis th... [more]
NAC54_ARATH1.057e-4052.87Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thal... [more]
NAC66_ARATH3.075e-4037.97NAC domain-containing protein 66 OS=Arabidopsis th... [more]
NAC9_ARATH5.246e-4048.15Putative NAC domain-containing protein 9 OS=Arabid... [more]
NAC2_ARATH6.851e-4052.83NAC domain-containing protein 2 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06O18_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06O18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838898 ID=CF838898; Name=CF838898; organism=Citrus sinensis; type=EST; length=843bp
GAAATTGAACCTTTGAATTTCTGTCTGAGATTAATTAGTAGAAGAAGATG
CCAGTAATATCGATGGAATCTCTGCCGTTGGGTTTCAGATTCAGACCGAC
AGACGAGGAGCTGATCAACCACTACCTTAGATTAAAGATCAACGGCCGTG
ATTCGGAGGTCGAGGTTATTCCCGAGATCGATGTTTGCAAACTGGAGCCG
TGGGACTTGCCTGGATTATCGGTGATAAAGACAGAAGATCCAGAGTGGTT
CTTTTTCTGCCCGCGCGATAGAAAATACCCGAACGGGCTTCGTTCGAATC
GTGCAACAGAAGCTGGATACTGGAAAGCTACGGGCAAGGATCGCACCATA
AGGAGCCGAAAGGCGGGGACTAATGCATGCATAGGAATGAAAAAGACATT
GGTGTTTTATAGGGGTCGTGCTCCTAAAGGTGAACGCACCAATTGGATCA
TGCACGAGTACCGCCCCACCCGTGAAGATCTCCTAGATAGCTCTACCAAG
CCTAGTCAGGCTGCATTTGTCCTCTGTCGCTTGTTCAGGAAGCCAGAAGA
GAAGGTCGATGTCCTAAAGTATGACGAAGTGGAACAAACAGAATCTCCTG
ATACAAATAAATCATCTCTTGATGACACCTCATCAGATCTTGTTCAAGAA
ACCGCAATGTCCGACTATGTCACTCCTAATGCTGTACTACCAGTTGAGAG
CTGCGGCAACAGTCATATAACTTCTGATGTTGAAGATCATTCAACTGAAG
GCACTGTTCTAGAGGAATATCAAGTTCCAGGAGAAATTTTGAATCAATTT
GACATGCCCAGTAATGCTCAAATTGATTGCAAAATATTCTCCC
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