CF838904

Overview
NameCF838904
Unique NameCF838904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10852 contig Csv1_Contig10852:15..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838904 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.064e-29
Identity = 74/197 (37.56%), Postives = 111/197 (56.35%), Query Frame = 2
Query:   35 TAISFPLLTFSTKP-LVGLAD----PLVDVHGNKVEASRDYYLVSAIXXXXXXXXXXXXXXNELCPLDVVQLSSDSERGTRLRFSMHD-KTSIINEDVDLNVRFST--ETRCNEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGRDRAMYKIVHCPSVCESCVSLCNDVG--VSNDHARRLALTN 595
            TA+   L  F++K    G+A+    P++D  G++++    YY++S+I               + CP  VVQ  SD + GT + FS  D K  ++    D+N+ F    +  C+  TVWR+D+YD S GKW++TT GV+G PG  TL +WFK E+ G     YK   CPSVC+SC +LC+D+G    +D   RLAL++
Sbjct:    5 TAVVLLLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAG--VLGYKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSD 199          
BLAST of CF838904 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 8.086e-27
Identity = 70/192 (36.46%), Postives = 99/192 (51.56%), Query Frame = 2
Query:   53 LLTFSTKPLVGLAD----PLVDVHGNKVEASRDYYLVSAIXXXXXXXXXXXXXXNE--LCPLDVVQLSSDSERGTRLRFSMHD-KTSIINEDVDLNVRFSTETRCN--EPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGRDRAMYKIVHCPSVCESCVSLCNDVGVSNDH--ARRLALTN 595
            LL  +  PL+  AD    P++D+ G K+    +YY+V  +              N   +CP  VVQ   + +    L F   + K  ++    DLN+ FS    C     TVWR+D YD S G++F+T GGV+GNPG +T+ +WFK E        YK+V CP+VC SC   C DVG+  D    RRLAL++
Sbjct:   17 LLAAAANPLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEF-CGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSD 207          
BLAST of CF838904 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.996e-17
Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 2
Query:   95 PLVDVHGNKVEASRDYYLVSAIXXXXXXXXXXXXXXNEL-CPLDVVQLSSDSERGTRLRFSMHDKTSIINEDVDLNVRFSTETRCNEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGRDRAMYKIVHCPSVCESCVSLCNDVGVSND--HARRLALTN 595
            P+VD+ G  V    DY++VSAI              N+  CPL VVQ   D+          + K +I+ E VDLNV+F+    CNE T W+VD + P    W +T GG +G  G ++  + FK ++ G   + YK   CPS   + +  CN+V +  D    RRL LTN
Sbjct:    5 PIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFDNGEPIIFSAIKNVKDNIVFESVDLNVKFNITINCNETTAWKVDRF-PGVIGWTVTLGGEKGYHGFESTHSMFKIKKAGLPFS-YKFHFCPSYPRTRLIPCNNVDIFFDKYRIRRLILTN 172          
BLAST of CF838904 vs. ExPASy Swiss-Prot
Match: DRTI_DELRE (Kunitz-type serine protease inhibitor DrTI OS=Delonix regia PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.524e-14
Identity = 47/168 (27.98%), Postives = 82/168 (48.81%), Query Frame = 2
Query:   89 ADPLVDVHGNKVEASRDYYLVSAIXXXXXXXXXXXXXXNELCPLDVVQLSSDSERGTRLRFSMHDKT-SIINEDVDLNVRFSTETRCNEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGRDRAMYKIVHCPSVCESCVSLCNDVGVSNDHARRLAL 589
            A+ + D+ G  V    +YY+VSAI                +CP+ ++Q  SD + G  +RFS  +++   I  D +L + F  +  C E + W +       G+  +  GG E +P  + ++ +FK E++G     YK+V CP   +S    C+D+G++ +  R L L
Sbjct:    3 AEKVYDIEGYPVFLGSEYYIVSAIIGAGGGGVRPGRTRGSMCPMSIIQEQSDLQMGLPVRFSSPEESQGKIYTDTELEIEFVEKPDCAESSKWVIVK---DSGEARVAIGGSEDHPQGELVRGFFKIEKLG--SLAYKLVFCP---KSSSGSCSDIGINYEGRRSLVL 162          
BLAST of CF838904 vs. ExPASy Swiss-Prot
Match: SPI2_SOLTU (Serine protease inhibitor 2 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.762e-11
Identity = 55/185 (29.73%), Postives = 84/185 (45.41%), Query Frame = 2
Query:   89 ADPLVDVHGNKVEASRDYYLVSAIXXXXXXXXXXXXXXNELCPL--DVVQLSSD-SERGTRLRF---SMHDKTSIINEDVDLNVRF--STETRCNEPTVWRVDSYDPSRGKWFITTGGVEGNPGAQTLKNWFKFERIGRDRAMYKIVHCPSVCESCVSLCNDVGVSNDHA-RRLALTNGRALAVV 616
            A P++DV G ++++   Y ++S                N   P    + + +SD    GT +RF   S H    I   ++ LN++F  ST   C   T+W+V  YD S G   + TGG  G    Q   +WFK   +   +  Y +++CP    S    C+ VGV + +  RRLAL N   L V+
Sbjct:    5 ATPVLDVTGKELDSRLSYRIISTFWGALGGDVYLGKSPNSDAPCANGIFRYNSDVGPSGTPVRFIGSSSHFGQGIFENEL-LNIQFAISTSKLCVSYTIWKVGDYDASLGTMLLETGGTIG----QADSSWFKI--VKSSQLGYNLLYCPVTSSSDDQFCSKVGVVHQNGKRRLALVNENPLDVL 182          
The following BLAST results are available for this feature:
BLAST of CF838904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ASP_THECC5.064e-2937.5621 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU8.086e-2736.46Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA1.996e-1735.29Latex serine proteinase inhibitor OS=Carica papaya... [more]
DRTI_DELRE3.524e-1427.98Kunitz-type serine protease inhibitor DrTI OS=Delo... [more]
SPI2_SOLTU4.762e-1129.73Serine protease inhibitor 2 OS=Solanum tuberosum P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06P01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838904 ID=CF838904; Name=CF838904; organism=Citrus sinensis; type=EST; length=804bp
CTCTGAAAGACATTAAATGAGTACTCCTTTTGTAACTGCAATCTCCTTCC
CTCTCCTTACCTTTTCCACAAAACCGCTTGTGGGACTCGCTGATCCTTTG
GTTGATGTCCATGGCAACAAGGTCGAAGCATCCCGAGACTACTATTTGGT
CTCAGCAATTCGAGGAGCAGGCGGTGGCGGCCTCACCCTCTTCAGGGGCA
GAAACGAACTCTGCCCACTTGATGTTGTCCAACTAAGTTCCGACTCAGAA
AGAGGAACCCGTTTAAGATTCTCAATGCATGATAAAACTAGTATTATCAA
TGAAGATGTGGATCTGAACGTGAGATTCTCCACAGAGACTCGCTGCAACG
AACCAACAGTATGGAGAGTCGACAGCTATGATCCATCGAGAGGAAAATGG
TTTATAACAACTGGTGGTGTTGAAGGAAACCCTGGAGCTCAAACTTTGAA
AAACTGGTTTAAGTTTGAGAGAATTGGAAGAGATCGAGCTATGTACAAGA
TTGTTCACTGTCCTTCCGTTTGCGAATCCTGTGTATCTTTATGCAATGAT
GTTGGGGTTTCTAACGATCATGCTCGACGTTTGGCTCTCACTAATGGGCG
CGCGCTTGCTGTTGTTCTAGTCCCTGGTAACGAGAGATCAGCCTCATGTG
CGTCTTGAATGCCCTTGTATCATTACTCTAAATAATGGATCGGGCTAGCT
CCTTGACGCTTATAACATAAACAAAAATGTCATTGCTAGCTAGCCTGTGT
ACCTTTGAACGAAATAAAGTGGCCAATTTTGACTGTTTAAAAAAAAAAAA
AAAA
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