CF838905

Overview
NameCF838905
Unique NameCF838905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF838905_ssr464 microsatellite CF838905_ssr464:464..475. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5280 contig Csv1_Contig5280:173..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL2N_ARATH (RING-H2 finger protein ATL2N OS=Arabidopsis thaliana GN=ATL2N PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.241e-29
Identity = 85/192 (44.27%), Postives = 107/192 (55.73%), Query Frame = 2
Query:   86 LSSGANTMNTAPPHAHQALDLSILKRIPAFVYSP-NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDITLVHPLVQVEEVVS------VIEPTERDLGVVHQMGCXXXXXXXXXLPQLESVSVEIPRARENFRGLDDMGLSLTNERNGFKSPGNRVLTLKRIWSI 640
            + S   T++ +P    QALD ++L +IP FVYS  N   P+E  +C+VCLSEFE+ + GR+LPKC H FHVDCID WF+S S CPLCRAPVQ       P  QV E  S      +  PTE         GC            L  + V+I R  E F G  + GL +    NG K PG+RVL+LKR+WSI
Sbjct:   65 IRSHLRTLSASP--RDQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPVQ-------PPFQVIETGSSSSSSPLTFPTE---------GCEREPI------DLAGIIVDISREVE-FEG-SNPGLPI---ENGSKFPGSRVLSLKRLWSI 227          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL3L_ARATH (RING-H2 finger protein ATL3L OS=Arabidopsis thaliana GN=ATL3L PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.982e-24
Identity = 56/99 (56.57%), Postives = 72/99 (72.73%), Query Frame = 2
Query:  140 LDLSILKRIPAFVYSPNIEDPKEPLD-CAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ--LDITLVHPLVQVEEVVSVIEPTE 427
            LD ++L++IP FVYS  ++  + PL+ C+VCLSEFE+++ GRVLPKC HVFHVDCID WF+S S+CPLCRAPVQ    +T   P+  V   V  IE TE
Sbjct:   88 LDPTVLEKIPIFVYS--VKTHESPLEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQPAQPVTEPEPVAAVFPSVKPIEDTE 184          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.322e-23
Identity = 66/179 (36.87%), Postives = 99/179 (55.31%), Query Frame = 2
Query:  128 AHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ----LDITLVHPLVQV-----EEVVSVIEPTERDLGVVHQMGCXXXXXXXXXLPQLESVSVEIPRARENFRGLDDMGLSLTNERNGFKSPGNRVLTLKRIWS 637
            A + LD +++K +P F +S   E  K+P++CAVCLSEFE++E GRVLP C+H FHVDCIDMWF SHS CPLCR+ V+    ++ T      +V      + V VIEP+    G+  +                +  ++E+PR R      D++    +     F+SP +R+L+  R+ S
Sbjct:   91 ASRGLDPNVIKSLPVFTFSD--ETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLVESLAGIESTAAAREREVVIAVDSDPVLVIEPSSSS-GLTDEPHGSGSSQMLREDSGRKPAAIEVPR-RTFSEFEDELTRRDSPASQSFRSPMSRMLSFTRMLS 265          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.079e-20
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 2
Query:   80 FFLSSGANTMNTAPPHAHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQ 358
            F  ++ A+T  T P      L+ SI+K +P F +S         ++C+VCLSEF+DNE+GRV+P C+H FHV CIDMWF SHS+CPLCR+ ++
Sbjct:   32 FNRTTAASTFFTDPSSTPGGLNPSIIKSLPIFTFSA--VTALFAMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQIE 122          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.116e-17
Identity = 43/78 (55.13%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  122 PHAHQALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 355
            P  +  LD  IL+ I   V+     D K+ L+CAVCLS+  D +  RVLP+C H FHVDCIDMWFQSHS CPLCR  V
Sbjct:   90 PLHNAGLDSKILQSIHVVVFK--CTDFKDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTV 165          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.458e-17
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  134 QALDLSILKRIPAFVYSP--NIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 349
            + LD SI++  P F YS    +   KE L+C+VCL+EFED+E  R++PKC HVFH  CID W +SH+ CPLCRA
Sbjct:  114 RGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRA 187          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.904e-17
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  140 LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRA 349
            LD S++K I  + Y   ++   E  DC+VCLSEF++NE+ R+LPKC H FHV CID W +SHSNCPLCRA
Sbjct:  134 LDESLIKSITVYKYR-KMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRA 202          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  125 HAHQA-LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPVQLDIT 370
            H H + +D S +  +P F Y   I     P DCAVCL EFE  +  R+LPKC H FH+DCID W  SHS CPLCR+ +  D++
Sbjct:  102 HLHDSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLS 184          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.248e-17
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 2
Query:  134 QALDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCRAPV 355
            + LD S++  IP FVY  N E+  E  +C +CL  +E  + GR L  C H FHV+CIDMW  SHS CPLCR+PV
Sbjct:  110 KGLDSSVISSIPLFVYEENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPV 183          
BLAST of CF838905 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.248e-17
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  125 HAHQA-LDLSILKRIPAFVYSPNIEDPKEPLDCAVCLSEFEDNENGRVLPKCRHVFHVDCIDMWFQSHSNCPLCR 346
            H H + LD +++  +P F+Y   I+  KEP DCAVCL EF +++  R+LP C H FH+DCID W  S+S CPLCR
Sbjct:  113 HLHDSGLDQALIDALPVFLYK-EIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCR 186          
The following BLAST results are available for this feature:
BLAST of CF838905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ATL2N_ARATH8.241e-2944.27RING-H2 finger protein ATL2N OS=Arabidopsis thalia... [more]
ATL3L_ARATH7.982e-2456.57RING-H2 finger protein ATL3L OS=Arabidopsis thalia... [more]
ATL3F_ARATH2.322e-2336.87RING-H2 finger protein ATL3F OS=Arabidopsis thalia... [more]
ATL4G_ARATH1.079e-2048.39RING-H2 finger protein ATL4G OS=Arabidopsis thalia... [more]
ATL1M_ARATH1.116e-1755.13RING-H2 finger protein ATL1M OS=Arabidopsis thalia... [more]
ATL1N_ARATH1.458e-1754.05RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]
ATL3A_ARATH1.904e-1757.14RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]
ATL4K_ARATH2.487e-1748.19RING-H2 finger protein ATL4K OS=Arabidopsis thalia... [more]
ATL5O_ARATH3.248e-1751.35RING-H2 finger protein ATL5O OS=Arabidopsis thalia... [more]
ATL1D_ARATH3.248e-1750.67RING-H2 finger protein ATL1D OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06P02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838905 ID=CF838905; Name=CF838905; organism=Citrus sinensis; type=EST; length=782bp
TGCCAGTTGCCCTTTATACCGCCACCGGCACCGTTACCGTTACCGTCACC
CCCTCAGACACCGCCGTGCCCATCGGCTCTTCTTTCTCTCTAGCGGTGCT
AATACCATGAACACAGCTCCTCCTCACGCTCATCAAGCTTTGGACCTCTC
TATTCTCAAAAGGATACCCGCTTTTGTCTACTCACCAAACATAGAAGACC
CCAAGGAGCCGCTAGACTGCGCCGTTTGCTTGTCGGAATTTGAAGACAAC
GAAAATGGCCGTGTCTTGCCCAAGTGTAGACATGTATTCCATGTTGATTG
CATCGACATGTGGTTTCAATCTCACTCTAATTGTCCACTCTGTAGAGCCC
CGGTTCAACTTGACATCACTCTGGTCCATCCACTGGTCCAAGTCGAAGAG
GTTGTCTCCGTTATCGAACCTACTGAGAGGGACTTAGGTGTTGTTCATCA
GATGGGTTGCTCGTCTTCTTCTTCTTCATCATCTTCTTTGCCGCAATTGG
AGAGTGTGTCGGTGGAGATACCTCGAGCTCGAGAGAACTTCAGAGGTTTG
GATGATATGGGTTTGAGTTTAACTAATGAACGCAACGGGTTCAAGTCTCC
GGGTAATCGGGTTCTAACTTTGAAGAGGATTTGGAGCATATGACTGCTTT
GCTGTTCAACTGACGAGAAAAGATAAAATTGAATCACCACAAGAGGACGG
ACCATTCTGTCTGTTGCCAACATGTGGTGGATATTTTGCAGAAGTGGCAA
ATTAATGCAACACCTATGTACAAATAATGTAT
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