CF838918

Overview
NameCF838918
Unique NameCF838918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF838918 vs. ExPASy Swiss-Prot
Match: GOX_SPIOL (Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.907e-32
Identity = 71/129 (55.04%), Postives = 90/129 (69.77%), Query Frame = 1
Query:   64 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYV 450
            E  N+NE++ +A+  LPKM YD+YA GAED+ TL EN  AF RI FR RIL+DV+ ID++TTIL +KIS PI+IAPTA+ K+A+PEGE ATARAA++  TIM LS                 RF+QLYV
Sbjct:    2 EITNVNEYEAIAKQKLPKMVYDYYASGAEDQWTLAENRNAFSRILFRPRILIDVTNIDMTTTILGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYV 130          

HSP 2 Score: 76.2554 bits (186), Expect = 2.314e-13
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1
Query:  622 VFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGL 783
            V+K R++ A LV+RAER GFKA+ LT DTPRLGRREADIKN+ + PP   LKN EG+
Sbjct:  130 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGI 186          
BLAST of CF838918 vs. ExPASy Swiss-Prot
Match: GOX2_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 OS=Arabidopsis thaliana GN=At3g14420 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.884e-31
Identity = 68/129 (52.71%), Postives = 90/129 (69.77%), Query Frame = 1
Query:   64 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYV 450
            E  N+ E+  +A+  LPKM YD+YA GAED+ TL+EN  AF RI FR RIL+DVS+ID++TT+L +KIS PI++APTA+ K+A+P+GE ATARAA++  TIM LS                 RF+QLYV
Sbjct:    2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYV 130          

HSP 2 Score: 72.7886 bits (177), Expect = 2.558e-12
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  622 VFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGL 783
            V+K R++   LV+RAER GFKA+ LT DTPRLGRRE+DIKN+   PP   LKN EGL
Sbjct:  130 VYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGL 186          
BLAST of CF838918 vs. ExPASy Swiss-Prot
Match: GOX1_ARATH (Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 OS=Arabidopsis thaliana GN=At3g14415 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.482e-31
Identity = 67/129 (51.94%), Postives = 89/129 (68.99%), Query Frame = 1
Query:   64 EPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYV 450
            E  N+ E+  +A+  LPKM YD+YA GAED+ TL+EN  AF RI FR RIL+DV++ID++TT+L +KIS PI++APTA  K+A+P+GE ATARAA++  TIM LS                 RF+QLYV
Sbjct:    2 EITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMATTVLGFKISMPIMVAPTAFQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYV 130          

HSP 2 Score: 70.8626 bits (172), Expect = 9.722e-12
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  622 VFKKRDITATLVQRAERNGFKALVLTADTPRLGRREADIKNKMITPP---LKNLEGL 783
            V+K R +   LV+RAE+ GFKA+ LT DTPRLGRRE+DIKN+   PP   LKN EGL
Sbjct:  130 VYKNRKVVEQLVRRAEKAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGL 186          
BLAST of CF838918 vs. ExPASy Swiss-Prot
Match: HAOX2_BOVIN (Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.686e-19
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = 1
Query:   70 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FTXXXXXXXXXXXXXXXRFYQLYV 450
            V L +F+E AR  L K  +DF  GGA+D  T  EN+ AF +I  R R L DVS++D+ TTI   +ISAPI IAPT  H+LA P+GE++TARAA + +   + S +                R++QLYV
Sbjct:    4 VCLTDFREHAREHLSKSTWDFIEGGADDCCTRDENMAAFKKIRLRPRYLKDVSKVDMRTTIQGAEISAPICIAPTGFHRLAWPDGEMSTARAAQAASICYITSTYASCSLEDIVAAAPRGLRWFQLYV 131          
BLAST of CF838918 vs. ExPASy Swiss-Prot
Match: HAOX_DICDI (Hydroxyacid oxidase OS=Dictyostelium discoideum GN=haox PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.072e-18
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   70 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS 378
            V+++E  E A+  LPKM YD+YA G+ D+ TL EN  AF RI    R LVDVS+++  T I    IS PI+IAP A+ ++A+  GE+ T  A+   NTIM LS
Sbjct:   32 VSVSELHEEAKRLLPKMAYDYYASGSNDQITLAENENAFSRIKLVPRSLVDVSKVNTKTRIFGRDISTPILIAPWAMQRMASQRGELDTVEASKEFNTIMTLS 134          
BLAST of CF838918 vs. ExPASy Swiss-Prot
Match: CYB2_HANAN (Cytochrome b2, mitochondrial OS=Hansenula anomala GN=CYB2 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.401e-18
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 1
Query:   61 AEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS 378
            ++ +NL++F+ +AR  LP     +Y   A+DE TL+EN  A+HRI F  +IL+DV  +D+ST     K SAP  I+ TAL KL +PEGEVA A+ A   + + ++S
Sbjct:  185 SQMINLHDFETIARQILPPPALAYYCSAADDEVTLRENHNAYHRIFFNPKILIDVKDVDISTEFFGEKTSAPFYISATALAKLGHPEGEVAIAKGAGREDVVQMIS 290          
BLAST of CF838918 vs. ExPASy Swiss-Prot
Match: HAOX2_HUMAN (Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 56/128 (43.75%), Postives = 69/128 (53.91%), Query Frame = 1
Query:   70 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS-FTXXXXXXXXXXXXXXXRFYQLYV 450
            V L +FQ  AR  L K   DF  GGA+D  T  +N+ AF RI  R R L DVS +D  TTI   +ISAPI IAPT  H L  P+GE++TARAA +     + S F                R++QLYV
Sbjct:    4 VCLTDFQAHAREQLSKSTRDFIEGGADDSITRDDNIAAFKRIRLRPRYLRDVSEVDTRTTIQGEEISAPICIAPTGFHCLVWPDGEMSTARAAQAAGICYITSTFASCSLEDIVIAAPEGLRWFQLYV 131          
BLAST of CF838918 vs. ExPASy Swiss-Prot
Match: HAOX1_HUMAN (Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 43/101 (42.57%), Postives = 67/101 (66.34%), Query Frame = 1
Query:   76 LNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLS 378
            +N++++ A+  LPK  YD+Y  GA DE TL +N+ AF R     R+L +V+  DLST++L  ++S PI +  TA+ ++A+ +GE+AT RA  S  T M+LS
Sbjct:    8 INDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLS 108          
BLAST of CF838918 vs. ExPASy Swiss-Prot
Match: HAOX2_RAT (Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.641e-17
Identity = 53/128 (41.41%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   70 VNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVL-SFTXXXXXXXXXXXXXXXRFYQLYV 450
            V L +F+  A+  L K  +DF  G A+D  T  EN+ AF RI  R R L D+S++D  TTI   +ISAPI I+PTA H +A P+GE +TARAA   N   V+ S+                R++QLY+
Sbjct:    4 VCLADFKAHAQKQLSKTSWDFIEGEADDGITYSENIAAFKRIRLRPRYLRDMSKVDTRTTIQGQEISAPICISPTAFHSIAWPDGEKSTARAAQEANICYVISSYASYSLEDIVAAAPEGFRWFQLYM 131          
BLAST of CF838918 vs. ExPASy Swiss-Prot
Match: MDLB_PSEPU ((S)-mandelate dehydrogenase OS=Pseudomonas putida GN=mdlB PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.236e-16
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 1
Query:   55 MAAEPVNLNEFQELARLALPKMYYDFYAGGAEDEHTLKENVEAFHRITFRSRILVDVSRIDLSTTILDYKISAPIIIAPTALHKLANPEGEVATARAAASCNTIMVLSFTXXXXXXXXXXXXXXXRFYQLYVV 453
            M+    N+ ++++L +  LPKM YD+  GGAEDE+ +K N + F +  F+ + LVDVSR  L   +L  + S P++I PT L+    P+G++A ARAA       VLS                  ++QLYV+
Sbjct:    1 MSQNLFNVEDYRKLRQKRLPKMVYDYLEGGAEDEYGVKHNRDVFQQWRFKPKRLVDVSRRSLQAEVLGKRQSMPLLIGPTGLNGALWPKGDLALARAATKAGIPFVLSTASNMSIEDLARQCDGDLWFQLYVI 133          
The following BLAST results are available for this feature:
BLAST of CF838918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
GOX_SPIOL2.907e-3255.04Peroxisomal (S)-2-hydroxy-acid oxidase OS=Spinacia... [more]
GOX2_ARATH1.884e-3152.71Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 ... [more]
GOX1_ARATH5.482e-3151.94Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 ... [more]
HAOX2_BOVIN3.686e-1943.75Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 S... [more]
HAOX_DICDI1.072e-1847.57Hydroxyacid oxidase OS=Dictyostelium discoideum GN... [more]
CYB2_HANAN1.401e-1843.40Cytochrome b2, mitochondrial OS=Hansenula anomala ... [more]
HAOX2_HUMAN9.078e-1843.75Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2... [more]
HAOX1_HUMAN9.078e-1842.57Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1... [more]
HAOX2_RAT2.641e-1741.41Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2... [more]
MDLB_PSEPU2.236e-1635.34(S)-mandelate dehydrogenase OS=Pseudomonas putida ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_06P19_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838918 ID=CF838918; Name=CF838918; organism=Citrus sinensis; type=EST; length=807bp
CGTGCCTCACGATCGACCTTCATCAGTTGAAATTTTTAGTCATTCGGGTT
CCAAATGGCAGCTGAACCTGTTAATTTGAATGAGTTCCAAGAATTGGCAA
GGCTGGCCCTTCCAAAAATGTATTATGATTTCTACGCTGGTGGAGCAGAA
GATGAACATACCCTAAAAGAGAATGTGGAAGCCTTTCATAGAATTACGTT
TCGGTCAAGAATTCTTGTCGATGTCAGCAGAATTGATTTATCGACTACCA
TACTTGATTACAAAATCTCGGCTCCCATTATCATTGCTCCAACGGCTTTG
CATAAGCTTGCAAACCCTGAAGGAGAGGTAGCCACAGCCAGAGCAGCAGC
TTCATGTAACACCATAATGGTTTTATCCTTCACATCTAGCAGCTCCATAG
AGGAGGTTGCGGCCAGCTCCAATGCTGTTCGCTTCTATCAATTATATGTA
GTTGGCTTGTCTTGGGCTCTTTCTTTTTTCTTTTTCCTTTTTTATTTTTT
ATTTTCCCCTCCTATTCTTATTAGGAAACTGCTCATTTTTTTGAGCAACA
ACTATTTTCTTCTTTCTTATAATGTTACTTAAAGGGTTTGAACCACACTA
TGGCGTCCTTTTTGTGAATAGGTATTCAAGAAACGAGATATAACAGCTAC
TCTAGTGCAGAGAGCTGAAAGGAATGGTTTTAAGGCTCTTGTCCTAACTG
CTGATACTCCAAGACTTGGTAGAAGGGAGGCAGATATAAAGAACAAAATG
ATTACACCGCCGTTGAAGAATTTGGAAGGCCTCTTATCAACCAAAGTCAG
CTCTGAT
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