CF838919

Overview
NameCF838919
Unique NameCF838919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2400 contig Csv1_Contig2400:21..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF838919 vs. ExPASy Swiss-Prot
Match: PSD12_PONAB (26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 2.108e-49
Identity = 101/246 (41.06%), Postives = 150/246 (60.98%), Query Frame = 1
Query:   91 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 828
            +K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + ++                       +LK  YY LMI+   H   YL IC+ Y+AIY+ P
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTE-----------------------KLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTP 254          
BLAST of CF838919 vs. ExPASy Swiss-Prot
Match: PSD12_HUMAN (26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens GN=PSMD12 PE=1 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 2.108e-49
Identity = 101/246 (41.06%), Postives = 150/246 (60.98%), Query Frame = 1
Query:   91 SKMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 828
            +K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + ++                       +LK  YY LMI+   H   YL IC+ Y+AIY+ P
Sbjct:   32 AKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTE-----------------------KLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTP 254          
BLAST of CF838919 vs. ExPASy Swiss-Prot
Match: PSD12_BOVIN (26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus GN=PSMD12 PE=2 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 2.108e-49
Identity = 102/245 (41.63%), Postives = 149/245 (60.82%), Query Frame = 1
Query:   94 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 828
            K+  +G L+  ++ LL+ EKQ R + D+  T + +  I+++C+EAK+W  LNE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + ++                       +LK  YY LMI+   H   YL IC+ Y+AIY+ P
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAIVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPIKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTE-----------------------KLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTP 254          
BLAST of CF838919 vs. ExPASy Swiss-Prot
Match: PSD12_MOUSE (26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus GN=Psmd12 PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 5.192e-48
Identity = 101/245 (41.22%), Postives = 147/245 (60.00%), Query Frame = 1
Query:   94 KMEGKGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 828
            K+  +G L+  ++ LL+ EKQ R + D+  T + +  ++++C+EAK+W   NE I+ LSK+R QLK            Y+++  DL  ++ LI TL  V+ GKIYVEIERARL K LA IKE+ G + EAA ++QE+ VET+G+M K E++ FILEQ+RLCL  +DY+R QI+S+KI+ + F  + + E  K K                      YY LMI+   H   YL IC+ Y+AIY+ P
Sbjct:   33 KLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAVVKMCYEAKEWDLHNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKINTK-FSQEENTENMKLK----------------------YYNLMIQLDQHEGSYLSICKHYRAIYDTP 254          
BLAST of CF838919 vs. ExPASy Swiss-Prot
Match: PSD12_DICDI (26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium discoideum GN=psmD12 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.577e-47
Identity = 102/257 (39.69%), Postives = 154/257 (59.92%), Query Frame = 1
Query:   73 SPAIIKSKMEGK-----GNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYEIP 828
            SP   KS  E +     G L   ++ LL TEKQ R + D   T K   EI++LC+EA     +NE++V LSK+RGQL+            Y+DQ  D+  ++ELI TL ++S GKI+VE ERARL K L+KIKE++G IA AA ++Q++ VET+G M K EKI F ++Q+R+C++ +D++RAQ++  K++ +    D ++                       +LK  Y++ MIRY+SH+ +Y+EI RCY +IY+ P
Sbjct:   22 SPIADKSCKENRELAKSGKLIEAIENLLITEKQCRQAEDSPSTSKIAAEIIKLCYEAGRLDLVNEKLVLLSKRRGQLRPAIKAIVQESMVYVDQITDMKQKLELIDTLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVETYGTMEKREKITFFIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQ-----------------------DLKIDYFKQMIRYFSHSANYIEIARCYLSIYDTP 255          
BLAST of CF838919 vs. ExPASy Swiss-Prot
Match: RPN5_SCHPO (26S proteasome regulatory subunit rpn5 OS=Schizosaccharomyces pombe GN=rpn5a PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.674e-38
Identity = 93/237 (39.24%), Postives = 139/237 (58.65%), Query Frame = 1
Query:  112 NLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTPDLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 822
            +++A +++LL  EKQ+R + D +   K +  I  L F A D++ LNEQ+V+L KK GQLK            Y+    DL T+I LI+TL +++ GKIYVE+ERARL + L++IKEEQG I  A +++    VET+G+    EK+AFIL+QVRL L R DY  A   ++KI+ + F+ +                    D+ S   LK  YYE  IR   H++ YL++C+ Y+A+Y+
Sbjct:   27 DIDANLEKLLIFEKQVRQASDTSTNTKVLIYIADLLFRAGDFQGLNEQLVSLFKKHGQLKQSMTSLVQHVMTYLPGIDDLKTKINLIETLRTITDGKIYVEVERARLTQLLSQIKEEQGDIKSAQEILCNEPVETYGSFDLKEKVAFILDQVRLFLLRSDYYMASTYTKKINVKFFEKE--------------------DVQS---LKLKYYEQKIRIGLHDDAYLDVCKYYRAVYD 240          
BLAST of CF838919 vs. ExPASy Swiss-Prot
Match: RPN5_YEAST (26S proteasome regulatory subunit RPN5 OS=Saccharomyces cerevisiae GN=RPN5 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 9.186e-37
Identity = 91/241 (37.76%), Postives = 137/241 (56.85%), Query Frame = 1
Query:  106 KGNLEAQVDQLLNTEKQMRLSGDVAGTKKAVTEILQLCFEAKDWKTLNEQIVNLSKKRGQLKXXXXXXXXXXXXYIDQTP--DLDTRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISPRVFDADPSKEKKKPKEGDNVVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKAIYE 822
            + +  + +DQLL  EK+ R + D+A +K+ + +I+ L      W  LNEQ+  LSKK GQLK            Y+  +   DL+TRI +I+T+  V+  KI+VE+ERAR+ K L +IK+E+G I EAAD++ E+ VET+G+M  +EKI FILEQ+ L + + DY +A +LSRKI  + F        K PK                  LK  YY L+++   H  +YLE+ +  + IY+
Sbjct:   29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF--------KNPK---------------YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246          
The following BLAST results are available for this feature:
BLAST of CF838919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PSD12_PONAB2.108e-4941.0626S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_HUMAN2.108e-4941.0626S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_BOVIN2.108e-4941.6326S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_MOUSE5.192e-4841.2226S proteasome non-ATPase regulatory subunit 12 OS... [more]
PSD12_DICDI2.577e-4739.6926S proteasome non-ATPase regulatory subunit 12 OS... [more]
RPN5_SCHPO1.674e-3839.2426S proteasome regulatory subunit rpn5 OS=Schizosa... [more]
RPN5_YEAST9.186e-3737.7626S proteasome regulatory subunit RPN5 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS03_06P20_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa06P20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF838919 ID=CF838919; Name=CF838919; organism=Citrus sinensis; type=EST; length=832bp
CAGAATCCCTCCCTGAACTCACTCTCTGAAAATTAGGGTTTTTTCCCCCT
TCTTTAACAATTTTGGGCATAATCTCCGGCGATTATCAAATCGAAGATGG
AGGGTAAAGGCAATTTGGAGGCGCAAGTAGATCAGCTTTTGAATACCGAG
AAGCAGATGAGATTATCCGGTGACGTGGCCGGCACCAAGAAGGCGGTGAC
GGAAATTTTGCAGCTTTGCTTTGAAGCTAAAGACTGGAAGACTCTCAATG
AACAGATTGTTAATCTTTCCAAGAAACGCGGTCAACTCAAGCAGGCTGTA
ACTGCAATGGTCCAGCAAGCAATGCAGTACATCGATCAGACGCCAGATCT
TGATACTCGTATAGAGCTCATCAAAACACTAAATAGTGTCTCTGCAGGGA
AGATATATGTTGAAATTGAGAGGGCAAGGTTGATTAAAAAACTTGCAAAG
ATTAAGGAAGAACAAGGGCTTATAGCGGAAGCTGCAGATCTGATGCAAGA
AGTGGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATCGCCT
TCATTCTTGAACAAGTCCGTCTGTGCCTAGACCGCCAAGATTATGTCCGT
GCACAAATTCTTTCAAGGAAGATTAGTCCAAGAGTTTTTGATGCTGATCC
TTCGAAAGAAAAGAAAAAGCCAAAAGAAGGTGACAATGTTGTTGAAGAGG
CTCCTGCTGATATACCATCATTATTGGAATTGAAAAGAATCTATTATGAA
CTAATGATTAGGTATTACTCACACAACAATGATTACCTTGAAATTTGTCG
GTGCTATAAAGCTATATATGAGATTCCATATA
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