CF931493

Overview
NameCF931493
Unique NameCF931493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length300
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: ALLB3_BETVE (Calcium-binding allergen Bet v 3 OS=Betula verrucosa GN=BETVIII PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.281e-26
Identity = 60/78 (76.92%), Postives = 68/78 (87.18%), Query Frame = 2
Query:    2 LSQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVRSS 235
            LSQEEAD    FKVFDEDGDG+ISA ELQ+VLGKLG +EG+EI RV++MI SVD N DGRVDFFEFK+MM+SVLVRSS
Sbjct:  128 LSQEEADSFGGFKVFDEDGDGYISARELQMVLGKLGFSEGSEIDRVEKMIVSVDSNRDGRVDFFEFKDMMRSVLVRSS 205          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML42_ARATH (Calcium-binding protein CML42 OS=Arabidopsis thaliana GN=CML42 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.121e-25
Identity = 55/77 (71.43%), Postives = 67/77 (87.01%), Query Frame = 2
Query:    5 SQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVRSS 235
            ++ E+DL+EAFKVFDE+GDGFISA ELQ VL KLGL EG E+ RV++MI SVDRN DGRVDFFEFKNMM++V++ SS
Sbjct:  115 AENESDLAEAFKVFDENGDGFISARELQTVLKKLGLPEGGEMERVEKMIVSVDRNQDGRVDFFEFKNMMRTVVIPSS 191          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CAST_SOLTU (Calcium-binding protein CAST OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.045e-24
Identity = 54/76 (71.05%), Postives = 67/76 (88.16%), Query Frame = 2
Query:    5 SQEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVRS 232
            +Q+E+DL EAF VFDE+GDGFISA ELQVVL KLGL EG+EI RV+ MI SV+++HDGRVDFFEFK+MM++V+V S
Sbjct:  124 AQDESDLKEAFDVFDENGDGFISAKELQVVLEKLGLPEGSEIDRVEMMISSVEQDHDGRVDFFEFKDMMRTVIVPS 199          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML43_ARATH (Probable calcium-binding protein CML43 OS=Arabidopsis thaliana GN=CML43 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.326e-23
Identity = 55/73 (75.34%), Postives = 61/73 (83.56%), Query Frame = 2
Query:   14 EADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLVRS 232
            E+DL EAF VFDEDGDGFISA ELQ VL KLGL E  EI +V++MI SVD NHDGRVDFFEFKNMMQ+V+V S
Sbjct:  109 ESDLEEAFNVFDEDGDGFISAVELQKVLKKLGLPEAGEIEQVEKMIVSVDSNHDGRVDFFEFKNMMQTVVVPS 181          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML27_ORYSJ (Probable calcium-binding protein CML27 OS=Oryza sativa subsp. japonica GN=CML27 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.891e-20
Identity = 48/72 (66.67%), Postives = 56/72 (77.78%), Query Frame = 2
Query:   11 EEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 226
            +E D+ EAF+VFDEDGDGFISA ELQ VL KLGL E   +A VQ+MI +VDR+ DGRVDF EFK MMQ + V
Sbjct:  116 DEGDMKEAFRVFDEDGDGFISAAELQAVLKKLGLPEARNLATVQEMICNVDRDCDGRVDFGEFKCMMQGITV 187          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML32_ORYSJ (Probable calcium-binding protein CML32 OS=Oryza sativa subsp. japonica GN=CML32 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.161e-19
Identity = 48/72 (66.67%), Postives = 56/72 (77.78%), Query Frame = 2
Query:   11 EEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 226
            EE ++ EAFKVFD DGDGFISA ELQ VL KLGL E   +A V++MI +VDRN DGRVDF EFK+MMQ + V
Sbjct:  122 EEEEMREAFKVFDVDGDGFISASELQEVLKKLGLPEAGSLATVREMICNVDRNSDGRVDFGEFKSMMQGITV 193          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML24_ORYSJ (Probable calcium-binding protein CML24 OS=Oryza sativa subsp. japonica GN=CML24 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.087e-17
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 2
Query:   14 EADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQSVLV 226
            + ++ EAFKVFD DGDGFISA ELQ VL KLG+ E   +A V++MI +VDR+ DGRVDF EFK MMQ + V
Sbjct:  124 DEEMKEAFKVFDVDGDGFISASELQEVLKKLGMPEAGSLANVREMICNVDRDSDGRVDFGEFKCMMQGITV 194          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML21_ORYSJ (Probable calcium-binding protein CML21 OS=Oryza sativa subsp. japonica GN=CML21 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.045e-17
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    8 QEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMM 211
            ++EAD+ EAF VFDEDGDG+ISA ELQ VL ++GL E   +ARV+ MI + DR+ DGRVD+ EFK MM
Sbjct:  126 EKEADMREAFGVFDEDGDGYISAAELQAVLSRMGLPEAACMARVRDMIAAADRDSDGRVDYEEFKAMM 193          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML22_ORYSJ (Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica GN=CML22 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.506e-14
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 2
Query:    8 QEEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 214
            +E+ D+ EAF+VFD +GDG+I+  EL  VL  LGL +G      ++MIG VDR+ DGRVDF EF  MM+
Sbjct:  174 EEDGDMREAFRVFDANGDGYITVDELGAVLASLGLKQGRTAEECRRMIGQVDRDGDGRVDFHEFLQMMR 242          
BLAST of CF931493 vs. ExPASy Swiss-Prot
Match: CML17_ORYSJ (Probable calcium-binding protein CML17 OS=Oryza sativa subsp. japonica GN=CML17 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.274e-14
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 2
Query:   11 EEADLSEAFKVFDEDGDGFISAHELQVVLGKLGLTEGNEIARVQQMIGSVDRNHDGRVDFFEFKNMMQ 214
            +EA + EAF VFD +GDGFI+  EL  VL  LG+ +G       +MIG VDR+ DGRVDF EFK MM+
Sbjct:   89 DEASMREAFDVFDRNGDGFITVDELGAVLASLGIKQGRTAEDCGRMIGQVDRDGDGRVDFLEFKQMMR 156          
The following BLAST results are available for this feature:
BLAST of CF931493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ALLB3_BETVE1.281e-2676.92Calcium-binding allergen Bet v 3 OS=Betula verruco... [more]
CML42_ARATH4.121e-2571.43Calcium-binding protein CML42 OS=Arabidopsis thali... [more]
CAST_SOLTU2.045e-2471.05Calcium-binding protein CAST OS=Solanum tuberosum ... [more]
CML43_ARATH1.326e-2375.34Probable calcium-binding protein CML43 OS=Arabidop... [more]
CML27_ORYSJ8.891e-2066.67Probable calcium-binding protein CML27 OS=Oryza sa... [more]
CML32_ORYSJ1.161e-1966.67Probable calcium-binding protein CML32 OS=Oryza sa... [more]
CML24_ORYSJ1.087e-1761.97Probable calcium-binding protein CML24 OS=Oryza sa... [more]
CML21_ORYSJ7.045e-1761.76Probable calcium-binding protein CML21 OS=Oryza sa... [more]
CML22_ORYSJ2.506e-1452.17Probable calcium-binding protein CML22 OS=Oryza sa... [more]
CML17_ORYSJ4.274e-1454.41Probable calcium-binding protein CML17 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionEST0563 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB251 similar to calcium-binding allergen Bet v 3 (acc# P43187), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931493 ID=CF931493; Name=CF931493; organism=Citrus sinensis; type=EST; length=300bp
ACTGTCGCAGGAGGAGGCCGACTTGTCGGAGGCGTTTAAGGTGTTTGATG
AGGACGGAGACGGATTCATTTCTGCACACGAGTTGCAAGTGGTTTTGGGG
AAGCTAGGCTTGACCGAAGGCAATGAAATTGCCAGAGTTCAGCAGATGAT
TGGCTCCGTTGACCGCAACCATGATGGCCGCGTTGACTTCTTCGAATTCA
AGAACATGATGCAGAGCGTTCTTGTTCGAAGTTCTTGATCTATCTTTTAT
CTTTCAAATTTTCAACTTTTAATGCCATCGTCGTTTCATGAATGTATGTG
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