CF931514

Overview
NameCF931514
Unique NameCF931514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.789e-27
Identity = 63/107 (58.88%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    4 SLR-RSASRWNTNSIGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            SLR  S S W  N +  F           ALKWAALEKLPT++RLRKG+L  S+G A EVD+ +LG QER+ L+++LVKV D DNE+FLLKLKNRIDRVGIDL  +E
Sbjct:   21 SLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIE 127          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.862e-25
Identity = 60/107 (56.07%), Postives = 73/107 (68.22%), Query Frame = 1
Query:    4 SLRRSASRWNTNSIG-AFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            SLRRS S W + S    F           ALKWAALEKLPTY+RLRKGI+T   GE  EVD+  LG QER+ L++KLV+  + DNERFLLKL+NR++RVGID   +E
Sbjct:   18 SLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEVDIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIE 124          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.862e-25
Identity = 60/102 (58.82%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   16 SASRWNTNSIGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            S S W  N    F           ALKWAALEKLPTY+RLRKGIL  S+G A EVDV + G+ ER+ L+++LVKV D DNE+FLLKLKNRIDRVGID   +E
Sbjct:   30 SNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGAAAEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIE 131          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.883e-23
Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    4 SLRRSASRWNTNS--IGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSRGEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            S+RR+AS W   S    AF           ALKWAA+EKLPTY+R+RKGILT   G   EVD+  LGLQER+ LI++LV+  + DNERFLLKL++R++RVGID   +E
Sbjct:   15 SVRRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEEVDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIE 120          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.631e-21
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    4 SLRRSASRWNTNS-IGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSR--GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            S+RR++S W  +S    F           AL+WAALEKLPT++RLRKGILT S   G  NE+D+  LG Q+ ++L+++L+KV D ++E+ L KLK RIDRVGIDL  +E
Sbjct:   12 SMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKGILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIE 120          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.802e-19
Identity = 56/120 (46.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 TSLRRSASRWNTNSIGAFXXXXXXXXXXX------ALKWAALEKLPTYNRLRKGILTTSR-----GEANE--VDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            +S R +AS W +   G F                 AL+WAALEKLPTY+R+R+ +L         GEA +  VDV +LG QER+ L+++LV+V + DNERFLLKLK RIDRVGID+  +E
Sbjct:   20 SSSRGAASMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIE 139          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.293e-18
Identity = 53/115 (46.09%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    4 SLRRSASRWNTNS---IGAFXXXXXXXXXXXALKWAALEKLPTYNRLRKGILTTSR------GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            SLRR  S W +       +            AL+WAALE+LPTY+R+R+GIL  S       GE  EVDV  LG +E + LI++LV+  D D+ERFLLKL+ R+DRVGID   +E
Sbjct:   10 SLRREGSMWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDGGAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIE 124          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.688e-18
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSRGEANE-----------VDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            AL+WAAL+KLPTY+R+R  IL    GE  E           VDV++LG  ER+ L+++LV+V D DNERFLLKLK RI RVGID+  +E
Sbjct:   56 ALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRALLERLVRVADDDNERFLLKLKERISRVGIDMPTIE 144          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.205e-18
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSR-------GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            AL+WAALEKLPTY+R+R+ IL           G    VDV+ LG +ER+ L+++LV+V D DNE+FLLKLK+R+DRVGID+  +E
Sbjct:   46 ALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIE 130          
BLAST of CF931514 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.205e-18
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   88 ALKWAALEKLPTYNRLRKGILTTSR-------GEANEVDVYNLGLQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGIDLTKVE 321
            AL+WAALEKLPTY+R+R+ IL           G    VDV+ LG +ER+ L+++LV+V D DNE+FLLKLK+R+DRVGID+  +E
Sbjct:   46 ALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIE 130          
The following BLAST results are available for this feature:
BLAST of CF931514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PDR1_TOBAC5.789e-2758.88Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
TUR2_SPIPO1.862e-2556.07Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR1_NICPL1.862e-2558.82Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR7_ORYSJ3.883e-2353.70Putative pleiotropic drug resistance protein 7 OS=... [more]
AB40G_ARATH1.631e-2149.54ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR2_ORYSJ5.802e-1946.67Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR4_ORYSJ1.293e-1846.09Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR1_ORYSJ1.688e-1853.93Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR3_ORYSJ2.205e-1854.12Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI2.205e-1854.12Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionEST0588 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P228 similar to pleiotropic drug resistance-like protein (acc# BAB 92011), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931514 ID=CF931514; Name=CF931514; organism=Citrus sinensis; type=EST; length=322bp
ACTAGCTTGCGTCGGAGCGCTTCTAGATGGAACACAAATTCCATCGGTGC
ATTTTCGAGGTCTTCAAGGGAAGAAGACGATGAGGAGGCTCTAAAATGGG
CTGCTCTCGAGAAATTGCCTACCTATAACCGTTTGAGGAAGGGGATATTA
ACTACCTCACGAGGTGAAGCTAATGAAGTTGATGTTTACAACCTTGGGCT
GCAAGAAAGGCAGAGGTTGATTGATAAATTGGTTAAAGTTACTGATGTTG
ATAACGAGAGGTTCTTGTTGAAGCTCAAGAACCGTATTGATAGAGTTGGA
ATAGACCTTACAAAAGTCGAAG
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