CF931517

Overview
NameCF931517
Unique NameCF931517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length331
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF931517 vs. ExPASy Swiss-Prot
Match: VPS18_MOUSE (Vacuolar protein sorting-associated protein 18 homolog OS=Mus musculus GN=Vps18 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.849e-25
Identity = 60/109 (55.05%), Postives = 79/109 (72.48%), Query Frame = 3
Query:    3 ALRLCLKEK*MRACVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFK 329
            ALRLC +    RACVH+Y ++ ++EEAV LALQVD +LA   AD  E+DE+LRKKLWL +A+HV+++E     E+++ A+A L     LLKIED+LPFFPDF  ID FK
Sbjct:  700 ALRLCAEHGHHRACVHVYKVLELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEE-----EDVQTAMACLASCP-LLKIEDVLPFFPDFVTIDHFK 802          
BLAST of CF931517 vs. ExPASy Swiss-Prot
Match: VPS18_HUMAN (Vacuolar protein sorting-associated protein 18 homolog OS=Homo sapiens GN=VPS18 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.849e-25
Identity = 60/109 (55.05%), Postives = 79/109 (72.48%), Query Frame = 3
Query:    3 ALRLCLKEK*MRACVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFK 329
            ALRLC +    RACVH+Y ++ ++EEAV LALQVD +LA   AD  E+DE+LRKKLWL +A+HV+++E     E+++ A+A L     LLKIED+LPFFPDF  ID FK
Sbjct:  700 ALRLCAEHGHHRACVHVYKVLELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEE-----EDVQTAMACLASCP-LLKIEDVLPFFPDFVTIDHFK 802          
BLAST of CF931517 vs. ExPASy Swiss-Prot
Match: VPS18_DANRE (Vacuolar protein sorting-associated protein 18 homolog OS=Danio rerio GN=vps18 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.154e-25
Identity = 60/109 (55.05%), Postives = 81/109 (74.31%), Query Frame = 3
Query:    3 ALRLCLKEK*MRACVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFK 329
            ALRLC +   ++ACV +Y +M ++EEAV LAL+VD +LA + AD  EDDE+LRKKLWL +A+HV+++EK     +++KA+  L   + LLKIEDILPFFPDF  ID FK
Sbjct:  700 ALRLCSEHGYLQACVLVYKIMELYEEAVDLALKVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEK-----DVKKAMNCLSSCN-LLKIEDILPFFPDFVTIDHFK 802          
BLAST of CF931517 vs. ExPASy Swiss-Prot
Match: VPS18_DROME (Vacuolar protein sorting-associated protein 18 homolog OS=Drosophila melanogaster GN=dor PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 1.519e-11
Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 3
Query:    3 ALRLCLKEK*MRACVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFK 329
            A ++C       A V +  M+     AV LAL  D +LA   A +  D + +R+KLWL +A H I   KGT   +++KA+  LKE D LL+IED+LPFF DF  ID+FK
Sbjct:  733 AHKVCTDLDVKEARVFLECMLRKWISAVDLALTFDMKLAKETASRPSDSK-IRRKLWLRIAYHDI---KGTN--DVKKALNLLKECD-LLRIEDLLPFFADFEKIDNFK 834          
The following BLAST results are available for this feature:
BLAST of CF931517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VPS18_MOUSE1.849e-2555.05Vacuolar protein sorting-associated protein 18 hom... [more]
VPS18_HUMAN1.849e-2555.05Vacuolar protein sorting-associated protein 18 hom... [more]
VPS18_DANRE3.154e-2555.05Vacuolar protein sorting-associated protein 18 hom... [more]
VPS18_DROME1.519e-1143.12Vacuolar protein sorting-associated protein 18 hom... [more]
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Properties
Property NameValue
Genbank descriptionEST0592 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P237 similar to unknown arabidopsis protein (acc# NP_172709), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931517 ID=CF931517; Name=CF931517; organism=Citrus sinensis; type=EST; length=331bp
ACGCCTTGCGTCTTTGCCTCAAGGAAAAGTGAATGCGTGCCTGTGTTCAT
ATATACGGCATGATGTCTATGCATGAAGAAGCAGTTGCGCTTGCTTTACA
GGTTGACCCCGAGCTAGCTATGGCCGAAGCTGATAAGGTTGAAGATGATG
AAGACTTGAGGAAAAAGCTTTGGCTCATGGTTGCAAAGCATGTAATTGAA
CAGGAAAAGGGGACTAAAAGAGAGAATATTCGGAAGGCAATTGCTTTTCT
GAAGGAAACTGATGGACTTCTGAAGATTGAGGATATCTTACCATTCTTTC
CTGACTTTGCGTTGATTGACGACTTCAAAGA
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