CF931517
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF931517 vs. ExPASy Swiss-Prot
Match: VPS18_MOUSE (Vacuolar protein sorting-associated protein 18 homolog OS=Mus musculus GN=Vps18 PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 1.849e-25 Identity = 60/109 (55.05%), Postives = 79/109 (72.48%), Query Frame = 3 Query: 3 ALRLCLKEK*MRACVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFK 329 ALRLC + RACVH+Y ++ ++EEAV LALQVD +LA AD E+DE+LRKKLWL +A+HV+++E E+++ A+A L LLKIED+LPFFPDF ID FK Sbjct: 700 ALRLCAEHGHHRACVHVYKVLELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEE-----EDVQTAMACLASCP-LLKIEDVLPFFPDFVTIDHFK 802
BLAST of CF931517 vs. ExPASy Swiss-Prot
Match: VPS18_HUMAN (Vacuolar protein sorting-associated protein 18 homolog OS=Homo sapiens GN=VPS18 PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 1.849e-25 Identity = 60/109 (55.05%), Postives = 79/109 (72.48%), Query Frame = 3 Query: 3 ALRLCLKEK*MRACVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFK 329 ALRLC + RACVH+Y ++ ++EEAV LALQVD +LA AD E+DE+LRKKLWL +A+HV+++E E+++ A+A L LLKIED+LPFFPDF ID FK Sbjct: 700 ALRLCAEHGHHRACVHVYKVLELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEE-----EDVQTAMACLASCP-LLKIEDVLPFFPDFVTIDHFK 802
BLAST of CF931517 vs. ExPASy Swiss-Prot
Match: VPS18_DANRE (Vacuolar protein sorting-associated protein 18 homolog OS=Danio rerio GN=vps18 PE=2 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 3.154e-25 Identity = 60/109 (55.05%), Postives = 81/109 (74.31%), Query Frame = 3 Query: 3 ALRLCLKEK*MRACVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFK 329 ALRLC + ++ACV +Y +M ++EEAV LAL+VD +LA + AD EDDE+LRKKLWL +A+HV+++EK +++KA+ L + LLKIEDILPFFPDF ID FK Sbjct: 700 ALRLCSEHGYLQACVLVYKIMELYEEAVDLALKVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEK-----DVKKAMNCLSSCN-LLKIEDILPFFPDFVTIDHFK 802
BLAST of CF931517 vs. ExPASy Swiss-Prot
Match: VPS18_DROME (Vacuolar protein sorting-associated protein 18 homolog OS=Drosophila melanogaster GN=dor PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 1.519e-11 Identity = 47/109 (43.12%), Postives = 64/109 (58.72%), Query Frame = 3 Query: 3 ALRLCLKEK*MRACVHIYGMMSMHEEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFK 329 A ++C A V + M+ AV LAL D +LA A + D + +R+KLWL +A H I KGT +++KA+ LKE D LL+IED+LPFF DF ID+FK Sbjct: 733 AHKVCTDLDVKEARVFLECMLRKWISAVDLALTFDMKLAKETASRPSDSK-IRRKLWLRIAYHDI---KGTN--DVKKALNLLKECD-LLRIEDLLPFFADFEKIDNFK 834 The following BLAST results are available for this feature:
BLAST of CF931517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF931517 ID=CF931517; Name=CF931517; organism=Citrus sinensis; type=EST; length=331bpback to top |