CF931519

Overview
NameCF931519
Unique NameCF931519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF931519_ssr58 microsatellite CF931519_ssr58:58..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF931519 vs. ExPASy Swiss-Prot
Match: HS174_ARATH (17.4 kDa class III heat shock protein OS=Arabidopsis thaliana GN=HSP17.4B PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19
Identity = 51/102 (50.00%), Postives = 65/102 (63.73%), Query Frame = 3 
Query:   99 AAAVNHLFDIPETMEKFTTPSRSPHQETNKSKGVSS---IPVDILDSPKDYIFFMDVPGRPKSDIQVTVEDERTLVIRSN-XXXXXXXXXXXXXXXIRLERR 392
            A A+NH F +PE +EK   P     +  N+S+G  S   IP+DIL+SPK+YIF++D+PG  KSDIQVTVE+ERTLVI+SN                IRLERR
Sbjct:    3 AVAINHFFGLPEAIEKLILPISRSGESNNESRGRGSSNNIPIDILESPKEYIFYLDIPGISKSDIQVTVEEERTLVIKSNGKRKRDDDESEEGSKYIRLERR 104
The following BLAST results are available for this feature:
BLAST of CF931519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HS174_ARATH1.958e-1950.0017.4 kDa class III heat shock protein OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionEST0594 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P241 similar to heat shock protein (acc#AAM67165), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF931519 ID=CF931519; Name=CF931519; organism=Citrus sinensis; type=EST; length=393bp
ACCGCGTCTTCTCGCAGGAGTTCCTTTCCCGCGCAAATTCATAACGCTGC
GAACAAGGAGAGAGAGAGTTGAAAATGAGTCGAGTAATTGATGATGTGGC
AGCAGCAGTGAACCATTTGTTTGATATACCAGAGACAATGGAGAAGTTCA
CAACGCCTTCAAGGTCTCCTCATCAAGAGACAAATAAAAGCAAGGGAGTG
AGTAGCATTCCCGTTGATATTTTGGATTCCCCCAAGGATTACATTTTCTT
CATGGATGTTCCTGGTCGCCCTAAATCTGATATCCAGGTCACGGTTGAAG
ATGAGAGAACCTTGGTAATTCGGAGCAATGGGAAAAGAAAACGTGAAGAT
GGCGAAGAGGAAGGATGCAAGTGCATCAGGCTTGAGAGGAGGG
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