CK739584

Overview
NameCK739584
Unique NameCK739584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length354
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1421 contig Csv1_Contig1421:1..354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.411e-41
Identity = 80/112 (71.43%), Postives = 91/112 (81.25%), Query Frame = 1
Query:   19 FSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            F  +  + S+   VLA DPDTLQD+CVAD +SG+KVNGF CK  +NITA DFFFAG+ KP VVNN+VGS VT ANVEKI GLNTLGVSL+RIDY  GGLNPPHTHPRATE+I
Sbjct:    6 FGFFFTLLSLNVIVLAYDPDTLQDLCVADRTSGIKVNGFTCKPESNITASDFFFAGIGKPAVVNNTVGSAVTGANVEKIAGLNTLGVSLARIDYAPGGLNPPHTHPRATEVI 117          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL22_ARATH (Germin-like protein subfamily 2 member 2 OS=Arabidopsis thaliana GN=At1g02335 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.463e-38
Identity = 70/103 (67.96%), Postives = 85/103 (82.52%), Query Frame = 1
Query:   46 IIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            +I  + A DPD LQD+CVAD S G K+NGF CK++ NIT  DFFFAG++KP V+N+++GS VT ANVEKIPGLNTL VSL+RIDY  GGLNPPHTHPRATE++
Sbjct:   16 MITSIRAYDPDALQDLCVADKSHGTKLNGFPCKETLNITESDFFFAGISKPAVINSTMGSAVTGANVEKIPGLNTLSVSLARIDYAPGGLNPPHTHPRATEVV 118          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.696e-37
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 1
Query:   25 TYLLIFSIIAGVLA--VDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            T LL+ + ++  ++   DPD LQD+CVAD  SG+K+NGF CKD+A +T+ DFF  GLAKPG+ NN+ G+LVT ANV  IPGLNTLGVSLSRIDY  GGLNPPHTHPRATE++
Sbjct:    7 TLLLLLTTVSFFISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEVV 118          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.973e-35
Identity = 71/97 (73.20%), Postives = 80/97 (82.47%), Query Frame = 1
Query:   64 AVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            A DPD LQD+CVAD +S VKVNGFACK  A +T DDF+F GLA  G  NN+ GS+VT ANVEK+PGLNTLGVS+SRIDY  GGLNPPHTHPRATEM+
Sbjct:   25 AGDPDLLQDICVADLTSAVKVNGFACK--AAVTEDDFYFKGLAAAGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMV 119          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.973e-35
Identity = 72/107 (67.29%), Postives = 84/107 (78.50%), Query Frame = 1
Query:   34 LIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            ++ ++ A  LA DPD LQDVCVAD +S VK+NGF CK  AN+TADDFFFAGL  PG  NN  GS VTAANV+  PG+NTLGVS++RIDY  GG NPPHTHPRATE+I
Sbjct:   14 VVLALAAPSLAGDPDMLQDVCVADLASPVKLNGFPCK--ANVTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEII 118          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: RHRE_PEA (Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 2.849e-34
Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   31 LLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            L++ +      A D D LQD+CVAD +S + VNGFACK ++N+TA+DFF   L K G  NN+ GSLVT ANV++IPGLNTLGVS++RIDY  GGLNPPHTHPRATEM+
Sbjct:    9 LVVLATATTATAADADALQDLCVADYASVILVNGFACKPASNVTAEDFFSNLLVKQGATNNTFGSLVTGANVQRIPGLNTLGVSMARIDYAPGGLNPPHTHPRATEMV 116          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.847e-33
Identity = 66/112 (58.93%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   19 FSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            F+T+L++   +  V     + LQDVCVAD S+ VKVNG+ CKDS  IT +DF+F GLA     N S GS+VT ANVEK+PGLNTLG+S+SRIDY   GLNPPH HPRA+E+I
Sbjct:    4 FATHLVVVVTMLFVAMASAEMLQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEII 115          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.114e-33
Identity = 71/121 (58.68%), Postives = 90/121 (74.38%), Query Frame = 1
Query:    4 MAINLFSTYLLIFSIIAGV-LAVDPDTLQDVCVADTSS---GVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            MA  + +T+ ++F  +A   LA DPD LQDVCVAD  S    +++NGF CK   N+TA+DFFF GL K G   N+VGS+VTAA+VE +PGLNT+GVS++RIDY   GLNPPHTHPRATE+I
Sbjct:    1 MAKLILATFAVVFMALAATSLAGDPDMLQDVCVADYKSLKGPLRLNGFPCKRIENVTANDFFFDGLMKAGNTGNAVGSVVTAASVESLPGLNTMGVSMARIDYAPWGLNPPHTHPRATEII 121          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: NEC1_NICLS (Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana sanderae GN=NECI PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.166e-33
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 1
Query:   28 YLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVVNNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            +LL  SI     A D D LQDVCVAD  S VKVNGF CK   N TA DF    ++KPG  NN  GS+VT ANVE++PGLNTLGVSL+RIDY  GG+NPPHTHPRA+EM+
Sbjct:   20 FLLAISIDRYCFAADEDMLQDVCVADLHSKVKVNGFPCK--TNFTAADFSSLAISKPGATNNKFGSVVTTANVEQVPGLNTLGVSLARIDYAPGGINPPHTHPRASEMV 126          
BLAST of CK739584 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.563e-32
Identity = 66/118 (55.93%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    4 MAINLFSTYLLIFSIIAGVLAVDPDTLQDVCVADTSSGVKVNGFACKDSANITADDFFFAGLAKPGVV-NNSVGSLVTAANVEKIPGLNTLGVSLSRIDYEAGGLNPPHTHPRATEMI 354
            MA ++   ++    + A +   D + LQD CVAD S+G+KVNG+ CKD A +T +DF+F GLA      N+S+GS VT ANVEK+PGLNTLGVS+SRIDY  GGLNPPH HPRA+E I
Sbjct:    1 MATSMIPIFVTFMLVAAHMALADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAI 118          
The following BLAST results are available for this feature:
BLAST of CK739584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GL24_ARATH1.411e-4171.43Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL22_ARATH9.463e-3867.96Germin-like protein subfamily 2 member 2 OS=Arabid... [more]
GL21_ARATH4.696e-3764.29Germin-like protein subfamily 2 member 1 OS=Arabid... [more]
GL52_ORYSJ1.973e-3573.20Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL11_ORYSJ1.973e-3567.29Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
RHRE_PEA2.849e-3462.04Rhicadhesin receptor OS=Pisum sativum GN=GER1 PE=1... [more]
GL25_ARATH1.847e-3358.93Probable germin-like protein subfamily 2 member 5 ... [more]
GL13_ORYSJ4.114e-3358.68Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
NEC1_NICLS9.166e-3363.30Nectarin-1 OS=Nicotiana langsdorffii x Nicotiana s... [more]
GL23_ARATH1.563e-3255.93Germin-like protein subfamily 2 member 3 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5971 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739584 ID=CK739584; Name=CK739584; organism=Citrus sinensis; type=EST; length=354bp
ATTATGGCTATCAATCTTTTCAGCACATACTTGCTTATTTTCAGCATCAT
AGCTGGAGTCCTTGCAGTCGATCCTGACACGCTCCAGGATGTTTGTGTGG
CCGACACCTCTTCAGGAGTCAAGGTGAACGGCTTTGCATGCAAAGATAGC
GCAAATATTACAGCAGATGATTTCTTCTTTGCTGGCCTAGCCAAGCCAGG
AGTAGTTAACAATTCAGTGGGATCGCTTGTAACGGCCGCCAATGTTGAAA
AAATTCCAGGCCTCAACACACTAGGCGTGTCCCTGTCCCGCATCGACTAC
GAAGCCGGTGGCCTGAACCCACCTCACACTCACCCACGTGCCACCGAAAT
GATC
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