CK739587

Overview
NameCK739587
Unique NameCK739587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10724 contig Csv1_Contig10724:653..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739587 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 1.655e-50
Identity = 94/100 (94.00%), Postives = 99/100 (99.00%), Query Frame = 1 
Query:    1 EMWGDGLQTRSFTFIDECVEGVLILTKSDFREPVNIGSDEMVSMNQMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITY 300
            EMWGDGLQTRSFTFIDECVEGVL LTKSDFREPVNIGSDEMVSMN+MAEIVLSFE+K+LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+M+LKDGLRITY
Sbjct:  228 EMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKQLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITY 327
[Close]
BLAST of CK739587 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.655e-50
Identity = 93/100 (93.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:    1 EMWGDGLQTRSFTFIDECVEGVLILTKSDFREPVNIGSDEMVSMNQMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITY 300
            EMWGDGLQTRSFTFIDECVEGVL LTKSDFREPVNIGSDEMVSMN+MAEI+LSFED++LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+MKLKDGLR TY
Sbjct:  235 EMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTY 334
[Close]
BLAST of CK739587 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.655e-50
Identity = 93/100 (93.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:    1 EMWGDGLQTRSFTFIDECVEGVLILTKSDFREPVNIGSDEMVSMNQMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITY 300
            EMWGDGLQTRSFTFIDECVEGVL LTKSDFREPVNIGSDEMVSMN+MAEI+LSFED++LPIHHIPGPEGVRGRNSDNTLIKEKLGWAP+MKLKDGLR TY
Sbjct:  235 EMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIILSFEDRELPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTY 334
[Close]
BLAST of CK739587 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.073e-49
Identity = 92/100 (92.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:    1 EMWGDGLQTRSFTFIDECVEGVLILTKSDFREPVNIGSDEMVSMNQMAEIVLSFEDKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITY 300
            EMWGDGLQTRSFTFIDECVEGVL LTKSDFREPVNIGSDEMVSMN+MAE+VLSFE+KKLPIHHIPGPEGVRGRNSDN LIKEKLGWAP+M+LK+GLRITY
Sbjct:  234 EMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITY 333
The following BLAST results are available for this feature:
BLAST of CK739587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME2_ORYSJ1.655e-5094.00GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME1_ORYSJ1.655e-5093.00GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI1.655e-5093.00GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME_ARATH1.073e-4992.00GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5974 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739587 ID=CK739587; Name=CK739587; organism=Citrus sinensis; type=EST; length=301bp
GAGATGTGGGGAGATGGACTTCAAACTCGATCTTTCACCTTCATTGATGA
ATGTGTTGAAGGTGTGCTCATATTGACCAAGTCAGACTTCCGTGAGCCAG
TGAACATTGGTAGTGATGAGATGGTTAGCATGAACCAGATGGCTGAGATT
GTTCTTAGCTTTGAGGACAAGAAGCTACCTATCCACCACATTCCTGGCCC
TGAGGGTGTCCGTGGTCGTAATTCAGACAACACACTGATCAAAGAGAAGC
TTGGTTGGGCACCATCCATGAAGTTGAAGGATGGGCTGAGAATTACGTAT
T
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