CK739588

Overview
NameCK739588
Unique NameCK739588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length271
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig185 contig Csv1_Contig185:888..1158. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739588 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.507e-11
Identity = 28/37 (75.68%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MTYSYCYDQIRYKVPPSECVINPLEAERLKVHDPVTF 111
            MTYSYCYD +RYKV  SECV+NP EA+RL+V+DPVTF
Sbjct:  272 MTYSYCYDHMRYKVVLSECVVNPAEAKRLRVYDPVTF 308
The following BLAST results are available for this feature:
BLAST of CK739588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
XTH28_ARATH7.507e-1175.68Probable xyloglucan endotransglucosylase/hydrolase... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5975 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739588 ID=CK739588; Name=CK739588; organism=Citrus sinensis; type=EST; length=271bp
ATGACATATTCCTACTGCTATGACCAAATTCGATACAAAGTTCCTCCATC
TGAGTGTGTGATCAACCCCCTTGAGGCGGAGCGCCTTAAAGTACACGATC
CAGTTACATTCGGGGGAGGGCGGCGCCATCACGGGAAACGACACCACCGA
AGCCGATCAAGCGGAACCAAGGCCAATGACGTTTGAGGAGGACTATTATG
CTACATGCAGGAGCACTAATTGGTCATCTCTCCTCTTCTAATGTCCTTTG
AGTTTGATTTTAGGAAGTGGG
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