CK739589

Overview
NameCK739589
Unique NameCK739589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739589_ssr512 microsatellite CK739589_ssr512:512..523. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:477..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 2.190e-77
Identity = 138/148 (93.24%), Postives = 143/148 (96.62%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTI 446
            FRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADPEK A LQLAEIKHARLAMVAFLGFAVQA  TGKGPLNNWATHLSDPLHTTI
Sbjct:  136 FRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 283          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.087e-76
Identity = 136/148 (91.89%), Postives = 142/148 (95.95%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTI 446
            FRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQA  TGKGPLNNWATHLSDPLHTTI
Sbjct:  133 FRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 280          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 2.873e-61
Identity = 116/138 (84.06%), Postives = 126/138 (91.30%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWAT 416
            FRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADPEK  TL+LAEIKH+RLAMVAFL FA+QA  TGKGP++  AT
Sbjct:  137 FRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 6.019e-43
Identity = 90/138 (65.22%), Postives = 109/138 (78.99%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKA-TLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWA 413
            FRECELIHGRWAMLA LGAL  E  TG++W +AGKVEL +G+SY G  LPFSIT LIWIEV+++G  EF RNSE +PEKR YPGG  FDPL LA++ E++A  L+ AEIKHARLAMV+F G+ VQA+ TG+G L + A
Sbjct:  133 FRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.700e-29
Identity = 72/152 (47.37%), Postives = 98/152 (64.47%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTI 446
            ++E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP K   L++ EIK+ RLA++A +GF V Q+   G GPL N ATHL+DP H  I
Sbjct:   84 YKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF-DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNI 234          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.221e-29
Identity = 75/152 (49.34%), Postives = 96/152 (63.16%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VELVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTI 446
            F+E E+ H RWAML   G L  E L    W  A +   L +G ++YLG P+P+ ++ T++ IE L I + E QR  E DPEK+ YPGG F DPLG + DP K   L+L EIK+ RLAM+AF+GF V Q+   G GPL N ATHL+DP H  I
Sbjct:   83 FKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF-DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.945e-25
Identity = 68/154 (44.16%), Postives = 95/154 (61.69%), Query Frame = 3
Query:    3 FRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 431
            ++  ELIH RWAML   G +  E L            W   G + L++G++  Y G+ +P ++   +  EV+++G  E+ R  + LD E +L+PGG F DPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP
Sbjct:  110 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDP 261          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.541e-25
Identity = 73/158 (46.20%), Postives = 91/158 (57.59%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWL---TGI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 434
            R  E+IHGRWAML  LG +  E L    G+      W  AG     EG   YLG P      SI  ++  +VL++G +E  R + LD       LYPGG++FDPLGLA DP   A L++ EIK+ RLAM +  GF VQA+VTGKGPL N   HL DP+
Sbjct:   96 RALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.261e-24
Identity = 72/161 (44.72%), Postives = 94/161 (58.39%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE+ A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   94 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSF-DPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250          
BLAST of CK739589 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.261e-24
Identity = 74/161 (45.96%), Postives = 94/161 (58.39%), Query Frame = 3
Query:    6 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 437
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW ++V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   91 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 247          
The following BLAST results are available for this feature:
BLAST of CK739589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB4A_ARATH2.190e-7793.24Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.087e-7691.89Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH2.873e-6184.06Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE6.019e-4365.22Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC1.700e-2947.37Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU2.221e-2949.34Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB26_ARATH1.945e-2544.16Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB23_HORVU2.541e-2546.20Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_APIGR1.261e-2444.72Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ORYSJ1.261e-2445.96Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5976 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739589 ID=CK739589; Name=CK739589; organism=Citrus sinensis; type=EST; length=525bp
GGTTCCGTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACT
CTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGC
TGGCAAGGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTC
CATTCTCAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTAC
ATTGAGTTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCC
GGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCCGAAAAGA
AAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTT
GCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCT
CAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTTCTT
GACACCTTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTT
GGCACTATTGGTATTATTATTATAT
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