CK739596

Overview
NameCK739596
Unique NameCK739596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length319
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8097 contig Csv1_Contig8097:550..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 8.903e-57
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 3
Query:    3 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            FIVE++ IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLAD
Sbjct:  154 FIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 257          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.519e-56
Identity = 96/104 (92.31%), Postives = 101/104 (97.12%), Query Frame = 3
Query:    3 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            F++E++ IGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNL AHLAD
Sbjct:  154 FVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 257          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20
Identity = 51/104 (49.04%), Postives = 63/104 (60.58%), Query Frame = 3
Query:    3 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            F++E I   + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +         E + KEI NGRLAMLA +G   QH  TG GP DNL+ H++D
Sbjct:  142 FVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGI-FNPLNFA-----PTLEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISD 239          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.907e-20
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 3
Query:    3 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            F++E I   + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +        +E + KE+ NGRLAMLA +G   QH  TG GP +NL+ HL+D
Sbjct:  143 FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI-FNPLNFA-----PTQEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSD 240          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.532e-19
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 3
Query:    3 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            F++EM  +G+AE RR+ D  KPG +         K  G   D  YPGG  F+PLG+G    + +KEL+ KEIKNGRLAMLA++G + Q + TG GP  NL+ HLAD
Sbjct:  156 FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDE-KSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLAD 260          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.641e-18
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 3
Query:    3 FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT--DVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            F++EM  +G+AE RR+ D  KPG +         K  G   +  YPGG +F+PLG+G    + +KEL+ KE+KNGRLAMLA++G + Q + TG GP  NL+ H+AD
Sbjct:  158 FVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDE-KSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVAD 262          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.942e-15
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 3
Query:   30 WAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            + E RRW DI  PG VN DPIF +  L   + GYPG + F+PL +   +P + KE   KE+ NGRLAMLA +G   QH   G GP +NL  HLAD
Sbjct:  131 YVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRV-FNPLNF---APLENKE---KELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLAD 218          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.041e-13
Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  117 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            TD  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GP+DNL+ HLAD
Sbjct:  187 TDPLYPGGS-FDPLGLAD-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLAD 250          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.296e-12
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 3
Query:  129 YPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLIAHLAD 314
            YPGG  FDPLG+ S  P K +EL+ KEIKNGRLA+LA++G   Q   Y GTGP++NL  HLAD
Sbjct:  168 YPGGA-FDPLGY-SKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLAD 228          
BLAST of CK739596 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.998e-12
Identity = 39/66 (59.09%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  117 TDVGYPGGLWFDPLGWGSGSPEKVKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLIAHLAD 314
            TD  YPGG  FDPLG     PE   EL+ KEIKNGRLAM ++ G + Q I TG GPI+NL  HLAD
Sbjct:  194 TDPIYPGGS-FDPLGLAE-DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD 257          
The following BLAST results are available for this feature:
BLAST of CK739596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CB12_SOLLC8.903e-5794.23Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.519e-5692.31Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PEA2.290e-2049.04Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH3.907e-2048.08Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB13_SOLLC2.532e-1948.11Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.641e-1845.28Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB120_HORVU4.942e-1549.47Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB27_TOBAC6.041e-1359.09Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB11_SOLLC2.296e-1260.32Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB2B_PINSY2.998e-1259.09Chlorophyll a-b binding protein type 2 member 1B, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5983 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739596 ID=CK739596; Name=CK739596; organism=Citrus sinensis; type=EST; length=319bp
TGTTCATTGTTGAGATGATATTCATAGGCTGGGCAGAGGGCAGACGGTGG
GCCGACATTATAAAGCCAGGCTGTGTGAACACTGACCCGATCTTCCCCAA
CAACAAGCTCACCGGCACCGATGTTGGGTACCCAGGTGGGCTTTGGTTTG
ACCCACTTGGCTGGGGATCCGGTTCGCCCGAGAAGGTAAAGGAGCTGAGG
ACTAAGGAGATCAAGAATGGAAGATTGGCTATGTTGGCTGTGATGGGTGC
TTGGTTCCAGCACATTTACACCGGCACCGGCCCCATTGACAATCTCATTG
CTCACCTTGCTGATTCCTG
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