CK739598

Overview
NameCK739598
Unique NameCK739598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10140 contig Csv1_Contig10140:17..463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739598 vs. ExPASy Swiss-Prot
Match: UK114_MOUSE (Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 59.6918 bits (143), Expect = 4.058e-13
Identity = 24/60 (40.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  210 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQGLKNI 389
            S +++ + T KAPAA+GPYSQA++ +  +++SG +GL P +G+ V   + ++ +Q LKN+
Sbjct:    3 SIIRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNL 62          

HSP 2 Score: 35.039 bits (79), Expect = 4.058e-13
Identity = 15/25 (60.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  373 RVLKIFGEILKASGADYSSVVKTTI 447
            + LK  GEILKA+G D+++VVKTT+
Sbjct:   57 QALKNLGEILKAAGCDFNNVVKTTV 81          
BLAST of CK739598 vs. ExPASy Swiss-Prot
Match: UK114_HUMAN (Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.946e-12
Identity = 23/60 (38.33%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  210 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQGLKNI 389
            S ++  + T KAP A+GPYSQA+  +  +++SG +G+ P +G+ VS  + ++ +Q LKN+
Sbjct:    3 SLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNM 62          

HSP 2 Score: 35.039 bits (79), Expect = 1.946e-12
Identity = 15/25 (60.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  373 RVLKIFGEILKASGADYSSVVKTTI 447
            + LK  GEILKA+G D+++VVKTT+
Sbjct:   57 QALKNMGEILKAAGCDFTNVVKTTV 81          
BLAST of CK739598 vs. ExPASy Swiss-Prot
Match: UK114_RAT (Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 56.225 bits (134), Expect = 4.264e-12
Identity = 23/60 (38.33%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  210 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQGLKNI 389
            S +++ + T+KAPAA+G YSQA+  +  ++VSG +G+ P +G+ V   + ++ +Q LKN+
Sbjct:    3 SIIRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNL 62          

HSP 2 Score: 35.039 bits (79), Expect = 4.264e-12
Identity = 15/25 (60.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  373 RVLKIFGEILKASGADYSSVVKTTI 447
            + LK  GEILKA+G D+++VVKTT+
Sbjct:   57 QALKNLGEILKAAGCDFTNVVKTTV 81          
BLAST of CK739598 vs. ExPASy Swiss-Prot
Match: UK114_BOVIN (Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV=3)

HSP 1 Score: 55.8398 bits (133), Expect = 9.804e-11
Identity = 24/60 (40.00%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  210 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQGLKNI 389
            S +++ + T KAPAA+GPYSQA+  +  +++SG LG+ P +G+ V   + ++ +Q L NI
Sbjct:    3 SLVRKIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVAEEAKQALTNI 62          

HSP 2 Score: 30.8018 bits (68), Expect = 9.804e-11
Identity = 13/25 (52.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  373 RVLKIFGEILKASGADYSSVVKTTI 447
            + L   GEILKA+G D+++VVK T+
Sbjct:   57 QALTNIGEILKAAGCDFTNVVKATV 81          
The following BLAST results are available for this feature:
BLAST of CK739598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UK114_MOUSE4.058e-1340.00Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 ... [more]
UK114_HUMAN1.946e-1238.33Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 ... [more]
UK114_RAT4.264e-1238.33Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 ... [more]
UK114_BOVIN9.804e-1140.00Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5985 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739598 ID=CK739598; Name=CK739598; organism=Citrus sinensis; type=EST; length=448bp
GAGAGAGCAACAGCGACAAAGACGAAGACATGGCGTGGTGTTCATTACGG
TCGTTGAATGTCCCAACCATCGACATGGGCGCACTGCGCACCCGCTCTCG
CTTAGCCGCCGTCGGAATCGGCTGCGCCTCGGTCGCCGGGTCCAGCGTCT
GGCGCTCTTCTTGCAAGAAACACTCCACTCCCTTTGCTTGCTTATCCACT
TCCGCCGTTTCTAATTTGAAGGAGGCTGTTGTGACTAACAAGGCTCCAGC
AGCATTGGGACCTTATTCTCAGGCCATCAAAGCAAATAACCTCGTTTTTG
TCTCTGGGGTTCTTGGGTTAGTTCCAGAGACTGGGAAATTTGTCTCAGAT
ACTATAGAGGACCAGACAGAGCAGGGTCTTAAAAATATTTGGGGAAATAC
TGAAAGCTAGCGGCGCTGACTATTCCTCTGTGGTTAAGACAACAATTT
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