CK739602

Overview
NameCK739602
Unique NameCK739602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length262
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10996 contig Csv1_Contig10996:19..280. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.051e-32
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV+LLLPSDVVIADKFA D NSK+VPA+AIPDGWMGLDIGP SVKTFN+ALDTTKTVIWNGPMGVFEFDKFA
Sbjct:  336 GVSLLLPSDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNDALDTTKTVIWNGPMGVFEFDKFA 407          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGKY_WHEAT (Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.598e-31
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP+DVV+ADKFAAD  SK+VPATAIPDGWMGLD+GP S+KTF EALDTTKTVIWNGPMGVFEF+KFA
Sbjct:  262 GVKLLLPTDVVVADKFAADAESKIVPATAIPDGWMGLDVGPDSIKTFAEALDTTKTVIWNGPMGVFEFEKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.598e-31
Identity = 61/72 (84.72%), Postives = 68/72 (94.44%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV+LLLPSDV+IADKFA D NS+ VPA+AIPDGWMGLDIGP SVKTFN+ALDTT+T+IWNGPMGVFEFDKFA
Sbjct:  333 GVSLLLPSDVIIADKFAPDANSQTVPASAIPDGWMGLDIGPDSVKTFNDALDTTQTIIWNGPMGVFEFDKFA 404          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGKY_TOBAC (Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.507e-30
Identity = 61/72 (84.72%), Postives = 67/72 (93.06%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV+LLLP+DVVIADKFAAD NSKVVPA+ IPDGWMGLDIGP ++K+F  ALDTTKTVIWNGPMGVFEFDKFA
Sbjct:  262 GVSLLLPTDVVIADKFAADANSKVVPASEIPDGWMGLDIGPDAIKSFGSALDTTKTVIWNGPMGVFEFDKFA 333          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.507e-30
Identity = 60/72 (83.33%), Postives = 69/72 (95.83%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV+LLLP+DVVIADKFAAD +SK+VPA+ IPDGWMGLDIGP S+KTF+EALDTT+TVIWNGPMGVFEF+KFA
Sbjct:  289 GVSLLLPTDVVIADKFAADADSKIVPASGIPDGWMGLDIGPDSIKTFSEALDTTQTVIWNGPMGVFEFEKFA 360          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.620e-29
Identity = 58/72 (80.56%), Postives = 66/72 (91.67%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV+LLLP+DVV+ADKFA D NSK+VPA+ I DGWMGLDIGP S+KTFNEALDTT+TVIWNGPMGVFE +KFA
Sbjct:  334 GVSLLLPTDVVVADKFAPDANSKIVPASGIEDGWMGLDIGPDSIKTFNEALDTTQTVIWNGPMGVFEMEKFA 405          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_CYAP4 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=pgk PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.424e-25
Identity = 54/72 (75.00%), Postives = 60/72 (83.33%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP+DVV+AD FAAD N++ V   +IPDGWMGLDIGP +VKTF EAL   KTVIWNGPMGVFEFDKFA
Sbjct:  267 GVALLLPTDVVVADAFAADANAQTVSVESIPDGWMGLDIGPDAVKTFQEALSDCKTVIWNGPMGVFEFDKFA 338          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_ANAVT (Phosphoglycerate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pgk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.859e-25
Identity = 55/72 (76.39%), Postives = 59/72 (81.94%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV+LLLP+DVV+AD FA D NS+ V    IPDGWMGLDIGP SVK F EAL  TKTVIWNGPMGVFEFDKFA
Sbjct:  261 GVSLLLPTDVVLADNFAPDANSQTVSIDNIPDGWMGLDIGPDSVKVFQEALADTKTVIWNGPMGVFEFDKFA 332          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGKH_CHLRE (Phosphoglycerate kinase, chloroplastic OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.142e-25
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEF 250
            GV LLLP+DVV+ADKF A+ N++ VP TAIPDGWMGLDIGP SVKTFN+AL   KTV+WNGPMGVFEF
Sbjct:  322 GVQLLLPTDVVVADKFDANANTQTVPITAIPDGWMGLDIGPDSVKTFNDALADAKTVVWNGPMGVFEF 389          
BLAST of CK739602 vs. ExPASy Swiss-Prot
Match: PGK_SYNS9 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9902) GN=pgk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.065e-25
Identity = 52/72 (72.22%), Postives = 58/72 (80.56%), Query Frame = 2
Query:   47 GVNLLLPSDVVIADKFAADPNSKVVPATAIPDGWMGLDIGPYSVKTFNEALDTTKTVIWNGPMGVFEFDKFA 262
            GV LLLP+DVV+AD FA D NS++   TAIPDGWMGLDIGP ++K F  AL   KTVIWNGPMGVFEFDKFA
Sbjct:  262 GVELLLPTDVVLADNFAPDANSQIADVTAIPDGWMGLDIGPDAIKVFQAALADCKTVIWNGPMGVFEFDKFA 333          
The following BLAST results are available for this feature:
BLAST of CK739602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 400
Match NameE-valueIdentityDescription
PGKH_TOBAC2.051e-3290.28Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKY_WHEAT6.598e-3184.72Phosphoglycerate kinase, cytosolic OS=Triticum aes... [more]
PGKH_WHEAT6.598e-3184.72Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGKY_TOBAC2.507e-3084.72Phosphoglycerate kinase, cytosolic OS=Nicotiana ta... [more]
PGKH_SPIOL2.507e-3083.33Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGKH_ARATH3.620e-2980.56Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
PGK_CYAP41.424e-2575.00Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_ANAVT1.859e-2576.39Phosphoglycerate kinase OS=Anabaena variabilis (st... [more]
PGKH_CHLRE4.142e-2576.47Phosphoglycerate kinase, chloroplastic OS=Chlamydo... [more]
PGK_SYNS97.065e-2572.22Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5989 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739602 ID=CK739602; Name=CK739602; organism=Citrus sinensis; type=EST; length=262bp
TAAGCTTGACCTTGCTACAACACTTCTTGCAAAGGCCAAGGCTAAAGGTG
TTAATCTTTTGTTACCCTCTGATGTGGTAATTGCTGACAAATTTGCTGCT
GACCCAAACAGCAAGGTTGTGCCAGCAACTGCCATTCCTGATGGCTGGAT
GGGATTGGATATTGGACCATATTCTGTTAAGACATTCAACGAAGCTTTAG
ATACTACCAAAACTGTCATCTGGAATGGCCCAATGGGAGTGTTTGAGTTT
GACAAGTTCGCT
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