CK739604

Overview
NameCK739604
Unique NameCK739604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig187 contig Csv1_Contig187:2..246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739604 vs. ExPASy Swiss-Prot
Match: RL92_ARATH (60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.978e-23
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 1
Query:   61 MKTILSSETLDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 243
            MKTILSSET+DIPDGV +K+NAKVIEVEGPRGKL+RDFKHLNLDF L+ D+ TGKR+LKID
Sbjct:    1 MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKID 61          
BLAST of CK739604 vs. ExPASy Swiss-Prot
Match: RL91_ARATH (60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 5.503e-22
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1
Query:   61 MKTILSSETLDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 243
            MKTILSSET+DIPD V +K++AKVIEVEGPRGKL RDFKHLNLDF L+ D ETGK+KLKID
Sbjct:    1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKID 61          
BLAST of CK739604 vs. ExPASy Swiss-Prot
Match: RL9_PEA (60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.091e-21
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 1
Query:   61 MKTILSSETLDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 243
            MKTILSSET++IPDGV +K+NAKVIEVEGPRGKL RDFKHLNLDF L+TD E GK+KLKID
Sbjct:    1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITD-ENGKKKLKID 60          
BLAST of CK739604 vs. ExPASy Swiss-Prot
Match: RL9_ORYSJ (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.925e-15
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 1
Query:   61 MKTILSSETLDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKID 243
            MKTIL+SET++IP+GV V++ AKV+ VEGPRGKL+R+FKHLNLDF L+     G RKL++D
Sbjct:    1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL----EGGRKLQVD 57          
The following BLAST results are available for this feature:
BLAST of CK739604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RL92_ARATH4.978e-2381.9760S ribosomal protein L9-2 OS=Arabidopsis thaliana... [more]
RL91_ARATH5.503e-2280.3360S ribosomal protein L9-1 OS=Arabidopsis thaliana... [more]
RL9_PEA2.091e-2181.9760S ribosomal protein L9 OS=Pisum sativum GN=RPL9 ... [more]
RL9_ORYSJ2.925e-1563.9360S ribosomal protein L9 OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_5991 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739604 ID=CK739604; Name=CK739604; organism=Citrus sinensis; type=EST; length=245bp
GGCAGCTCTAGCTTAAGCGTAGGAGGAGAAGAAGAAGGAAGATATTACAG
AGAGAGGAAAATGAAGACAATTCTCTCTTCAGAGACATTGGACATCCCAG
ATGGGGTGAAAGTCAAGATAAATGCAAAGGTTATTGAAGTAGAGGGACCG
AGAGGTAAGCTCAGCCGGGACTTCAAGCATTTGAACCTCGACTTCCATCT
CATGACTGACGAGGAAACCGGTAAGCGCAAGCTTAAGATCGATGC
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