CK739606

Overview
NameCK739606
Unique NameCK739606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739606_ssr5 microsatellite CK739606_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4194 contig Csv1_Contig4194:73..466. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739606 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 207.608 bits (527), Expect = 1.581e-53
Identity = 106/115 (92.17%), Postives = 111/115 (96.52%), Query Frame = 3
Query:   51 RTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKGDKETLDMLAALGMSDISGLVEVE 395
            +TVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIK DKETL+MLA+LGMSD SG+  VE
Sbjct:    7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVE 121          
BLAST of CK739606 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 6.007e-53
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 3
Query:   51 RTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKGDKETLDMLAALGMSDISGLVEVE 395
            +TVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIK DKETL+MLA+LGMSD  G+  VE
Sbjct:    7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVE 121          
BLAST of CK739606 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 6.007e-53
Identity = 103/115 (89.57%), Postives = 112/115 (97.39%), Query Frame = 3
Query:   51 RTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKGDKETLDMLAALGMSDISGLVEVE 395
            +TVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIK D++K DKETL+MLA+LGMSDI+G+ +VE
Sbjct:    7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVE 121          
BLAST of CK739606 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 1.748e-52
Identity = 104/115 (90.43%), Postives = 110/115 (95.65%), Query Frame = 3
Query:   51 RTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKGDKETLDMLAALGMSDISGLVEVE 395
            +TVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIK DKETL+MLA+LGMSD  G+  V+
Sbjct:    7 KTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVD 121          
BLAST of CK739606 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 3.894e-52
Identity = 103/113 (91.15%), Postives = 110/113 (97.35%), Query Frame = 3
Query:   51 RTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKGDKETLDMLAALGMSDISGLVE 389
            +TVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I+ DKETLDML+ALGMSD+ G+V+
Sbjct:    7 KTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK 119          
BLAST of CK739606 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.312e-35
Identity = 72/112 (64.29%), Postives = 92/112 (82.14%), Query Frame = 3
Query:   51 RTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKGDKETLDMLAALGMSDISGLV 386
            +T K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D+I  D++T DML ALG   I  +V
Sbjct:    7 KTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118          
BLAST of CK739606 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 7.378e-35
Identity = 67/106 (63.21%), Postives = 91/106 (85.85%), Query Frame = 3
Query:   51 RTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKGDKETLDMLAALGMS 368
            +TVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+ D++T DML  L +S
Sbjct:    7 KTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of CK739606 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 7.378e-35
Identity = 67/106 (63.21%), Postives = 91/106 (85.85%), Query Frame = 3
Query:   51 RTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKGDKETLDMLAALGMS 368
            +TVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+ D++T DML  L +S
Sbjct:    7 KTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of CK739606 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.644e-34
Identity = 69/108 (63.89%), Postives = 89/108 (82.41%), Query Frame = 3
Query:   51 RTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKGDKETLDMLAALGMSDI 374
            +T K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D +  D++T DML +LG   I
Sbjct:    7 KTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI 114          
BLAST of CK739606 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.782e-34
Identity = 68/111 (61.26%), Postives = 91/111 (81.98%), Query Frame = 3
Query:   51 RTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKGDKETLDMLAALGMSDISGL 383
            +TVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+ D +T +ML  L    +S L
Sbjct:    7 KTVKKAARVIIEKYYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNL 117          
The following BLAST results are available for this feature:
BLAST of CK739606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS172_ARATH1.581e-5392.1740S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS174_ARATH6.007e-5391.3040S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS173_ARATH6.007e-5389.5740S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS171_ARATH1.748e-5290.4340S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS17_SOLLC3.894e-5291.1540S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS17B_SCHPO3.312e-3564.2940S ribosomal protein S17-B OS=Schizosaccharomyces... [more]
RS17_THEPA7.378e-3563.2140S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN7.378e-3563.2140S ribosomal protein S17 OS=Theileria annulata GN... [more]
RS17A_SCHPO1.644e-3463.8940S ribosomal protein S17-A OS=Schizosaccharomyces... [more]
RS17_BOVIN4.782e-3461.2640S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5993 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739606 ID=CK739606; Name=CK739606; organism=Citrus sinensis; type=EST; length=396bp
AAAACAGCAGCAGCAGCTTTCTTAAACTGAAATGGGTCGGGTTCGTACCA
AGAACCGTGAAGAAGTCCTCTCGCCAGGTGATTGAAAGGTACTACTCAAG
AATGACACTGGACTTCCATACCAACAAGAAAATTTTGGAGGAGGTTGCTA
TCATCCCCTCGAAGAGGCTGCGTAACAAAATTGCTGGGTTCTCAACCCAT
TTGATGAAGAGGATTCAGAAGGGTCCAGTTCGTGGAATCTCCCTTAAATT
GCAGGAAGAGGAGCGCGAACGCCGCATGGACTTTGTGCCTGATGAGTCAG
CTATTAAGACTGATGAAATTAAGGGTGACAAGGAAACCTTGGATATGCTT
GCTGCTCTTGGCATGTCCGACATTTCTGGGCTTGTTGAAGTTGAGC
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