CK739609

Overview
NameCK739609
Unique NameCK739609
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length240
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13727 contig Csv1_Contig13727:19..258. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.114e-30
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 3
Query:   33 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            MAPKQPNTGLFVGLNKGHIVTKKEL PRP+DRKGKTSKR HFVR +IREVAGF PYEKRITELLKVGKD
Sbjct:    1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKD 69          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.544e-23
Identity = 51/69 (73.91%), Postives = 57/69 (82.61%), Query Frame = 3
Query:   33 MAPKQPNTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            M   Q  TGLFVGLNKGH+VT++EL PRP  RKGKTSKR  F+R +I+EVAG APYEKRITELLKVGKD
Sbjct:    1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKD 69          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.547e-23
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 3
Query:   54 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            TGLFVGLNKGH+VTK+E PPRP +RKGKTSKR  F+R +I+EVAG APYEKRITELLKVGKD
Sbjct:    4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKD 65          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.116e-22
Identity = 50/62 (80.65%), Postives = 55/62 (88.71%), Query Frame = 3
Query:   54 TGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            TGLFVGLNKGH+VT++EL PRP  RKGKTSKR  F+R +IREVAG APYEKRITELLKVGKD
Sbjct:    8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKD 69          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe GN=rpl36a PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.561e-16
Identity = 37/61 (60.66%), Postives = 51/61 (83.61%), Query Frame = 3
Query:   57 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            GL VGLNKG ++TK++LP RP+ RKG+ SKR  FVR+++REVAGFAPYE+R+ EL++  +D
Sbjct:    4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQD 64          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_ENTCP (60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.012e-15
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 3
Query:   66 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            VGLNKGH VTKK   PRP+ RKG  S+RV  VR V+REVAG+APYE+R+ ELLKVGKD
Sbjct:    6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKD 63          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36B_SCHPO (60S ribosomal protein L36-B OS=Schizosaccharomyces pombe GN=rpl36b PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.012e-15
Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 3
Query:   57 GLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            GL VGLNKG  +TK++LP RP+ RKG  SKR  FVR+++REVAGFAPYE+R+ EL++  +D
Sbjct:    4 GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQD 64          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_IXOSC (60S ribosomal protein L36 OS=Ixodes scapularis GN=RpL36 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.119e-14
Identity = 39/60 (65.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:   60 LFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            L VGL KGH VTK E  PRP+ RKG  SK   FVR +IREV GFAP+E+R  ELLKV KD
Sbjct:    7 LAVGLGKGHKVTKNEYKPRPSRRKGALSKHTRFVRDLIREVCGFAPFERRAMELLKVSKD 66          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_TRIHM (60S ribosomal protein L36 OS=Trichoderma hamatum GN=rpl36 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.616e-13
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 3
Query:   33 MAPKQP-NTGLFVGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            MA + P  TGL VGLNKGH  T + + PR +  KG  SKR  FVR V++EVAG APYE+R+ ELL+  KD
Sbjct:    1 MAKEAPAKTGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKD 70          
BLAST of CK739609 vs. ExPASy Swiss-Prot
Match: RL36_XENTR (60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.599e-13
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 3
Query:   66 VGLNKGHIVTKKELPPRPADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 239
            VGLNKGH VTK    PR   R+G+ +K   FVR +IREV GFAPYE+R  ELLKV KD
Sbjct:    9 VGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKD 66          
The following BLAST results are available for this feature:
BLAST of CK739609 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RL36_DAUCA1.114e-3091.3060S ribosomal protein L36 OS=Daucus carota GN=RPL3... [more]
RL362_ARATH6.544e-2373.9160S ribosomal protein L36-2 OS=Arabidopsis thalian... [more]
RL363_ARATH8.547e-2380.6560S ribosomal protein L36-3 OS=Arabidopsis thalian... [more]
RL361_ARATH1.116e-2280.6560S ribosomal protein L36-1 OS=Arabidopsis thalian... [more]
RL36A_SCHPO1.561e-1660.6660S ribosomal protein L36-A OS=Schizosaccharomyces... [more]
RL36_ENTCP1.012e-1570.6960S ribosomal protein L36 OS=Enteromorpha compress... [more]
RL36B_SCHPO1.012e-1560.6660S ribosomal protein L36-B OS=Schizosaccharomyces... [more]
RL36_IXOSC1.119e-1465.0060S ribosomal protein L36 OS=Ixodes scapularis GN=... [more]
RL36_TRIHM1.616e-1355.7160S ribosomal protein L36 OS=Trichoderma hamatum G... [more]
RL36_XENTR3.599e-1362.0760S ribosomal protein L36 OS=Xenopus tropicalis GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_5996 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739609 ID=CK739609; Name=CK739609; organism=Citrus sinensis; type=EST; length=240bp
GTTTCCGCAGCAACTCAGTTTCGTCGGAGGTGATGGCTCCGAAACAGCCA
AATACTGGTCTCTTTGTTGGATTAAACAAGGGTCATATTGTGACGAAGAA
GGAACTGCCGCCACGCCCAGCAGATCGCAAAGGGAAAACAAGCAAAAGGG
TCCACTTCGTGAGGACTGTGATTAGGGAAGTTGCTGGCTTTGCACCCTAT
GAGAAAAGGATCACTGAGCTTCTTAAAGTCGGCAAGGACA
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