CK739613

Overview
NameCK739613
Unique NameCK739613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739613_ssr341 microsatellite CK739613_ssr341:341..355. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK739613 vs. ExPASy Swiss-Prot
Match: MDHP_MEDSA (Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.462e-25
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 2
Query:    2 SKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 181
            SKGDGDYELVKDVIFDDYLR+++AKTE ELLAEKKCVAHLTGEGIA CDLP DTMLPGEM
Sbjct:  378 SKGDGDYELVKDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM 437          
BLAST of CK739613 vs. ExPASy Swiss-Prot
Match: MDHP_PEA (Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 9.358e-25
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 2
Query:    2 SKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 181
            SKGDGDYELV DVIFDDYLR+++AKTE ELLAEKKCVAHLTGEGIA CDLP DTMLPGEM
Sbjct:  382 SKGDGDYELVNDVIFDDYLRQKLAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM 441          
BLAST of CK739613 vs. ExPASy Swiss-Prot
Match: MDHP_FLABI (Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.358e-25
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 2
Query:    2 SKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 181
            SKGDGDYE VKDVIFDDYL K+I K+E ELLAEKKCVAHLTGEGIA CDLPEDTMLPGEM
Sbjct:  394 SKGDGDYEFVKDVIFDDYLSKKIKKSEDELLAEKKCVAHLTGEGIAVCDLPEDTMLPGEM 453          
BLAST of CK739613 vs. ExPASy Swiss-Prot
Match: MDHP_SPIOL (Malate dehydrogenase [NADP], chloroplastic OS=Spinacia oleracea GN=MDH PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.706e-23
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 2
Query:    2 SKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPE-DTMLPGEM 181
            SKGDGDYELVKDVIFDDYLRKRI  +E+ELLAEK+C AHLTGEGIA CDLP  DTMLPGEM
Sbjct:  375 SKGDGDYELVKDVIFDDYLRKRIKTSEEELLAEKRCTAHLTGEGIAVCDLPAGDTMLPGEM 435          
BLAST of CK739613 vs. ExPASy Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.706e-23
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 2
Query:    2 SKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPE-DTMLPGEM 181
            SKGDGDYELVKDV+FDDYLR+RI K+E+ELLAEK+C AHLTGEG+A CDLP  DTMLPGEM
Sbjct:  381 SKGDGDYELVKDVVFDDYLRQRIKKSEEELLAEKRCTAHLTGEGVAVCDLPAGDTMLPGEM 441          
BLAST of CK739613 vs. ExPASy Swiss-Prot
Match: MDHP_MAIZE (Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.414e-22
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 2
Query:    2 SKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 181
            SKGDGDYEL  DV+ DD+L +RI K+E ELLAEKKCVAHLTGEG AFCDLPEDTMLPGE+
Sbjct:  373 SKGDGDYELASDVLMDDFLWERIKKSEAELLAEKKCVAHLTGEGNAFCDLPEDTMLPGEV 432          
BLAST of CK739613 vs. ExPASy Swiss-Prot
Match: MDHP2_SORBI (Malate dehydrogenase [NADP] 2, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.680e-21
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 2
Query:    2 SKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGE 178
            SKGDGDYEL  DV  DD+L +RI K+E ELLAEKKCVAHLTGEG AFCDLPEDTMLPGE
Sbjct:  373 SKGDGDYELATDVSMDDFLWERIKKSEAELLAEKKCVAHLTGEGDAFCDLPEDTMLPGE 431          
BLAST of CK739613 vs. ExPASy Swiss-Prot
Match: MDHP1_SORBI (Malate dehydrogenase [NADP] 1, chloroplastic OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.398e-20
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:    2 SKGDGDYELVKDVIFDDYLRKRIAKTEQELLAEKKCVAHLTGEGIAFCDLPEDTMLPGEM 181
            SKGDGDYEL  DV  DD+L +RI K+E ELLAEKKCVAHLTGEG A+CD+PEDTMLPGE+
Sbjct:  370 SKGDGDYELATDVSMDDFLWERIKKSEAELLAEKKCVAHLTGEGNAYCDVPEDTMLPGEV 429          
The following BLAST results are available for this feature:
BLAST of CK739613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MDHP_MEDSA2.462e-2590.00Malate dehydrogenase [NADP], chloroplastic OS=Medi... [more]
MDHP_PEA9.358e-2588.33Malate dehydrogenase [NADP], chloroplastic OS=Pisu... [more]
MDHP_FLABI9.358e-2588.33Malate dehydrogenase [NADP], chloroplastic OS=Flav... [more]
MDHP_SPIOL6.706e-2385.25Malate dehydrogenase [NADP], chloroplastic OS=Spin... [more]
MDHP_MESCR6.706e-2381.97Malate dehydrogenase [NADP], chloroplastic OS=Mese... [more]
MDHP_MAIZE7.414e-2280.00Malate dehydrogenase [NADP], chloroplastic OS=Zea ... [more]
MDHP2_SORBI3.680e-2181.36Malate dehydrogenase [NADP] 2, chloroplastic OS=So... [more]
MDHP1_SORBI1.398e-2076.67Malate dehydrogenase [NADP] 1, chloroplastic OS=So... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6000 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE57F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739613 ID=CK739613; Name=CK739613; organism=Citrus sinensis; type=EST; length=517bp
ATCAAAAGGAGATGGTGATTATGAACTTGTCAAGGATGTAATATTTGATG
ACTACCTTCGCAAGCGGATAGCGAAGACCGAACAAGAGTTGCTAGCTGAG
AAGAAATGTGTGGCCCATCTTACAGGAGAGGGCATTGCTTTTTGTGATCT
ACCAGAGGACACGATGCTTCCCGGAGAAATGTAAACGTGGTTAGGGCTCT
AGGAAATCATGACTGCTACTGCAATAAGCTGTAGAGTGAGAAGGCAGAAT
ATGAACTATCTATTTATTACGAGTGTGCAGGATAACGTGCCAATATTAAA
CCATTTTAATGAAATTTGAGATTGGAAGTGTCCAGTCAAGTTGGCTTGGC
TTGGCTTTTTGCCGTGGGTACCTTATGTGTGAATACTCGACACTGATATA
CCACACCACATAAGAACGTTGACATTCTGTATTATTTTGTCCTTATATAT
AATCACAGTATGTACCTCACAGAATGATAATTTGTGAATCATATTTTTCT
AAAAAAAAAAAAAAAAA
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